miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 34375 0.68 0.747104
Target:  5'- gGGCGuuGcGCACCAGCAgguggugGCGCuCGGg -3'
miRNA:   3'- -CUGCggCuCGUGGUCGUa------CGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 34585 0.78 0.241111
Target:  5'- uGACGCCGGGCugCAGgc-GCGCGCAGa -3'
miRNA:   3'- -CUGCGGCUCGugGUCguaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 36228 0.66 0.866346
Target:  5'- gGACcCCGAGCaggacuACCGacuGCcgGCGCGCGAc -3'
miRNA:   3'- -CUGcGGCUCG------UGGU---CGuaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 37058 0.69 0.718317
Target:  5'- gGACGCCGAaaACCGGCAgcugcUGgGCACc- -3'
miRNA:   3'- -CUGCGGCUcgUGGUCGU-----ACgCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 37433 0.67 0.826512
Target:  5'- cGGCGCCGAGCcucugaaggugacGCUgugGGCucGCGCGCGGg -3'
miRNA:   3'- -CUGCGGCUCG-------------UGG---UCGuaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 39455 0.66 0.858925
Target:  5'- cGGCGCCGAGgGCCGcgucgaaggauuGCGgaucgGCGCAa-- -3'
miRNA:   3'- -CUGCGGCUCgUGGU------------CGUa----CGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 39562 0.68 0.774108
Target:  5'- cGACGCCGgccaucuGGCugCgcGGCGugaUGCGCGCGu -3'
miRNA:   3'- -CUGCGGC-------UCGugG--UCGU---ACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 39690 0.67 0.793038
Target:  5'- aACGCCGuGCGCCAGaugGUGCcCAu -3'
miRNA:   3'- cUGCGGCuCGUGGUCguaCGCGuGUu -5'
14235 5' -58.3 NC_003521.1 + 40308 0.72 0.559407
Target:  5'- uGGCGuuGAGCcccuugGCCAGCucgGUGCGCGCc- -3'
miRNA:   3'- -CUGCggCUCG------UGGUCG---UACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 44363 0.7 0.629047
Target:  5'- --gGCCGAGUGCCAGCGgagguuCGCGCGg -3'
miRNA:   3'- cugCGGCUCGUGGUCGUac----GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 45903 0.94 0.023531
Target:  5'- cGACG-CGAGCACCAGCAUGCGCACAAa -3'
miRNA:   3'- -CUGCgGCUCGUGGUCGUACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 48237 0.69 0.688894
Target:  5'- cGACGCCGAGCAgCCuGCGUuccGCGgGgGAa -3'
miRNA:   3'- -CUGCGGCUCGU-GGuCGUA---CGCgUgUU- -5'
14235 5' -58.3 NC_003521.1 + 48714 0.66 0.851307
Target:  5'- cGAgGCCGGGagagguggagaCGCCGGCGacgcUGCaGCACAAg -3'
miRNA:   3'- -CUgCGGCUC-----------GUGGUCGU----ACG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 49817 0.67 0.810498
Target:  5'- --gGCUGGGCGCCGuGCAgUGCGCcguGCAGa -3'
miRNA:   3'- cugCGGCUCGUGGU-CGU-ACGCG---UGUU- -5'
14235 5' -58.3 NC_003521.1 + 53380 0.66 0.863402
Target:  5'- uGACGCgGcGCACCAGCuucugcagcuccuUGCGgGCGu -3'
miRNA:   3'- -CUGCGgCuCGUGGUCGu------------ACGCgUGUu -5'
14235 5' -58.3 NC_003521.1 + 53947 0.67 0.810498
Target:  5'- aGACGCUGAGCuggGCCgacgAGcCGUGCuGCACGc -3'
miRNA:   3'- -CUGCGGCUCG---UGG----UC-GUACG-CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 54077 0.74 0.437496
Target:  5'- -cCGCCGAGCcCCAGCAUGgGCuCGc -3'
miRNA:   3'- cuGCGGCUCGuGGUCGUACgCGuGUu -5'
14235 5' -58.3 NC_003521.1 + 56796 0.66 0.858925
Target:  5'- --gGCCGcccaACCGGCGUcGCGCGCGAa -3'
miRNA:   3'- cugCGGCucg-UGGUCGUA-CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 56917 0.66 0.878498
Target:  5'- aGCGCCGcAGCACCgccuccagcaccucGGCcucGUGcCGCACGu -3'
miRNA:   3'- cUGCGGC-UCGUGG--------------UCG---UAC-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 59090 0.72 0.559407
Target:  5'- cGCGCgGccGCuugGCCAGCGUGCGCGCGu -3'
miRNA:   3'- cUGCGgCu-CG---UGGUCGUACGCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.