miRNA display CGI


Results 21 - 40 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 226029 0.72 0.543745
Target:  5'- cGGCGCCGAaccaguccagcaGCACCAGCAccucggccacgaagGCGCGCc- -3'
miRNA:   3'- -CUGCGGCU------------CGUGGUCGUa-------------CGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 86237 0.72 0.549602
Target:  5'- uGCGCCGAGCGCguGCGguugagaaucGCGCugAGg -3'
miRNA:   3'- cUGCGGCUCGUGguCGUa---------CGCGugUU- -5'
14235 5' -58.3 NC_003521.1 + 88010 0.72 0.549602
Target:  5'- cGACGCCGAGCuguaccaccuGCCGGUgaccgaggcgGUGCGCAa-- -3'
miRNA:   3'- -CUGCGGCUCG----------UGGUCG----------UACGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 228740 0.72 0.549602
Target:  5'- uGCGUggUGAGCAgCGGCGUGCGCAUc- -3'
miRNA:   3'- cUGCG--GCUCGUgGUCGUACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 40308 0.72 0.559407
Target:  5'- uGGCGuuGAGCcccuugGCCAGCucgGUGCGCGCc- -3'
miRNA:   3'- -CUGCggCUCG------UGGUCG---UACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 59090 0.72 0.559407
Target:  5'- cGCGCgGccGCuugGCCAGCGUGCGCGCGu -3'
miRNA:   3'- cUGCGgCu-CG---UGGUCGUACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 214542 0.72 0.559407
Target:  5'- aGAUGCCcAGCACCAGCAccgGgGUGCAGu -3'
miRNA:   3'- -CUGCGGcUCGUGGUCGUa--CgCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 103500 0.72 0.559407
Target:  5'- uGGCGaaagggCGAGC-CCAGCAgcagGCGCGCGAa -3'
miRNA:   3'- -CUGCg-----GCUCGuGGUCGUa---CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 14677 0.71 0.566299
Target:  5'- cGACGCCGAGUGCCgccgcuggugguggGGCAuccgcgccaaccUGUGCACGc -3'
miRNA:   3'- -CUGCGGCUCGUGG--------------UCGU------------ACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 168451 0.71 0.56926
Target:  5'- gGACGCCGAGUACgGGCuggGCGagGCGGa -3'
miRNA:   3'- -CUGCGGCUCGUGgUCGua-CGCg-UGUU- -5'
14235 5' -58.3 NC_003521.1 + 73211 0.71 0.578165
Target:  5'- cGACcCCGAGCGCCuGCGgcgccucUGCGCGCc- -3'
miRNA:   3'- -CUGcGGCUCGUGGuCGU-------ACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 110806 0.71 0.579156
Target:  5'- uGACGCUGAaaGCCAGCGgccguUGCGCGCc- -3'
miRNA:   3'- -CUGCGGCUcgUGGUCGU-----ACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 64743 0.71 0.599049
Target:  5'- gGACGCCGuGGCcaagacGCCGGCcgGCGCGgCAc -3'
miRNA:   3'- -CUGCGGC-UCG------UGGUCGuaCGCGU-GUu -5'
14235 5' -58.3 NC_003521.1 + 186296 0.71 0.599049
Target:  5'- -cCGCCGGGCcCCAGCG-GCGCcguGCAGa -3'
miRNA:   3'- cuGCGGCUCGuGGUCGUaCGCG---UGUU- -5'
14235 5' -58.3 NC_003521.1 + 26467 0.71 0.609034
Target:  5'- cGugGCCuggGAGCACC-GCcUGCGCGCu- -3'
miRNA:   3'- -CugCGG---CUCGUGGuCGuACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 116367 0.71 0.609035
Target:  5'- cGAgGCCGAGCugCuGC-UGCcGCGCGAc -3'
miRNA:   3'- -CUgCGGCUCGugGuCGuACG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 179858 0.71 0.619036
Target:  5'- --gGUCGGGCAUCAGgAUGCgGCACAGc -3'
miRNA:   3'- cugCGGCUCGUGGUCgUACG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 124534 0.71 0.619036
Target:  5'- --aGCUGuccuccAGCGCCAGCuUGCGCACGu -3'
miRNA:   3'- cugCGGC------UCGUGGUCGuACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 44363 0.7 0.629047
Target:  5'- --gGCCGAGUGCCAGCGgagguuCGCGCGg -3'
miRNA:   3'- cugCGGCUCGUGGUCGUac----GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 100969 0.7 0.629047
Target:  5'- aGCGCCGuGC-CCGGC--GCGCACGg -3'
miRNA:   3'- cUGCGGCuCGuGGUCGuaCGCGUGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.