miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 222489 0.66 0.873567
Target:  5'- cACGCCGAacugguccaacaGCACCAcGCcgcUGgGCACGAa -3'
miRNA:   3'- cUGCGGCU------------CGUGGU-CGu--ACgCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 56917 0.66 0.878498
Target:  5'- aGCGCCGcAGCACCgccuccagcaccucGGCcucGUGcCGCACGu -3'
miRNA:   3'- cUGCGGC-UCGUGG--------------UCG---UAC-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 60328 0.66 0.851307
Target:  5'- cGGCGCUGAuGCAgCCGGCcaaccUGCGCAg-- -3'
miRNA:   3'- -CUGCGGCU-CGU-GGUCGu----ACGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 225118 0.66 0.861917
Target:  5'- gGAUGCCGAGCGaCAGCAccuggucgacgugguUGCGgACc- -3'
miRNA:   3'- -CUGCGGCUCGUgGUCGU---------------ACGCgUGuu -5'
14235 5' -58.3 NC_003521.1 + 211108 0.66 0.858925
Target:  5'- cGCGCCGAG-GCuCAGCAgccagGCGC-CGAg -3'
miRNA:   3'- cUGCGGCUCgUG-GUCGUa----CGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 121424 0.66 0.858925
Target:  5'- uGCGCaugaaGGGCugCGGguUGCGCGuCAu -3'
miRNA:   3'- cUGCGg----CUCGugGUCguACGCGU-GUu -5'
14235 5' -58.3 NC_003521.1 + 53380 0.66 0.863402
Target:  5'- uGACGCgGcGCACCAGCuucugcagcuccuUGCGgGCGu -3'
miRNA:   3'- -CUGCGgCuCGUGGUCGu------------ACGCgUGUu -5'
14235 5' -58.3 NC_003521.1 + 144222 0.66 0.858925
Target:  5'- uGCGCCGAcGCcuGCCuGCucaucauggGCGCGCAGa -3'
miRNA:   3'- cUGCGGCU-CG--UGGuCGua-------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 64871 0.66 0.858925
Target:  5'- gGGCGCCGAcguGCGCgAGCuguacgaGCGCuACAAa -3'
miRNA:   3'- -CUGCGGCU---CGUGgUCGua-----CGCG-UGUU- -5'
14235 5' -58.3 NC_003521.1 + 217407 0.66 0.858925
Target:  5'- --gGCUGAGCGgCGGCAUGaagccggugcaGCACAGg -3'
miRNA:   3'- cugCGGCUCGUgGUCGUACg----------CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 39455 0.66 0.858925
Target:  5'- cGGCGCCGAGgGCCGcgucgaaggauuGCGgaucgGCGCAa-- -3'
miRNA:   3'- -CUGCGGCUCgUGGU------------CGUa----CGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 117487 0.66 0.880579
Target:  5'- cGGCGaCGGGCcuguCCGGCGggGCGUACGg -3'
miRNA:   3'- -CUGCgGCUCGu---GGUCGUa-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 24399 0.66 0.879888
Target:  5'- cGGCGCCGGGC-CCgcggAGCAUagaaagccagacgGCGCAgGGg -3'
miRNA:   3'- -CUGCGGCUCGuGG----UCGUA-------------CGCGUgUU- -5'
14235 5' -58.3 NC_003521.1 + 144174 0.66 0.873567
Target:  5'- cACGCCG-GCGCC-GCcUGcCGCGCGc -3'
miRNA:   3'- cUGCGGCuCGUGGuCGuAC-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 215190 0.66 0.866346
Target:  5'- uGAUGUCGuggucacGCGCCAGCA-GCGC-CAGc -3'
miRNA:   3'- -CUGCGGCu------CGUGGUCGUaCGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 223224 0.66 0.873567
Target:  5'- uGACGCagguaGAGCcCCugcagcagcgagAGCGUGCGCugGu -3'
miRNA:   3'- -CUGCGg----CUCGuGG------------UCGUACGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 90857 0.66 0.866346
Target:  5'- uGCGCgGcacAGUGCCAacgcgaagcgcGCAUGCGCACGu -3'
miRNA:   3'- cUGCGgC---UCGUGGU-----------CGUACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 88839 0.66 0.880579
Target:  5'- cACGCCGccgucguagcacAGCACgGGCGUGCGaacCGAg -3'
miRNA:   3'- cUGCGGC------------UCGUGgUCGUACGCgu-GUU- -5'
14235 5' -58.3 NC_003521.1 + 149355 0.66 0.843498
Target:  5'- cACGCauacacccgCGAGCugCGcgcGUAUGCGCGCAu -3'
miRNA:   3'- cUGCG---------GCUCGugGU---CGUACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 18550 0.66 0.851307
Target:  5'- gGGCuCUGGGCACCAuCAcGCGCGCGc -3'
miRNA:   3'- -CUGcGGCUCGUGGUcGUaCGCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.