miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 215190 0.66 0.866346
Target:  5'- uGAUGUCGuggucacGCGCCAGCA-GCGC-CAGc -3'
miRNA:   3'- -CUGCGGCu------CGUGGUCGUaCGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 214542 0.72 0.559407
Target:  5'- aGAUGCCcAGCACCAGCAccgGgGUGCAGu -3'
miRNA:   3'- -CUGCGGcUCGUGGUCGUa--CgCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 213714 0.69 0.718317
Target:  5'- -uCGCCc-GCACCGGCcUGCGCGCc- -3'
miRNA:   3'- cuGCGGcuCGUGGUCGuACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 213022 0.69 0.718317
Target:  5'- uGGCGCCGGGCgaGCCGGCcgaGCGgGCc- -3'
miRNA:   3'- -CUGCGGCUCG--UGGUCGua-CGCgUGuu -5'
14235 5' -58.3 NC_003521.1 + 212717 0.67 0.801841
Target:  5'- -cCGCCaGGGUACCAGCAUGCa----- -3'
miRNA:   3'- cuGCGG-CUCGUGGUCGUACGcguguu -5'
14235 5' -58.3 NC_003521.1 + 212289 0.69 0.727995
Target:  5'- --gGCCaGGGCgaagGCCGGCAUGgGCACGc -3'
miRNA:   3'- cugCGG-CUCG----UGGUCGUACgCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 211395 0.77 0.303183
Target:  5'- aGGCGCCGGcucucguGCAgCAGCcgGCGCACAu -3'
miRNA:   3'- -CUGCGGCU-------CGUgGUCGuaCGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 211108 0.66 0.858925
Target:  5'- cGCGCCGAG-GCuCAGCAgccagGCGC-CGAg -3'
miRNA:   3'- cUGCGGCUCgUG-GUCGUa----CGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 209868 0.66 0.851307
Target:  5'- -gUGCCGAGCGCCuGGCuUG-GCACu- -3'
miRNA:   3'- cuGCGGCUCGUGG-UCGuACgCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 209102 0.75 0.370461
Target:  5'- gGugGCCGcGGCGucCCAGCAcGCGCACAu -3'
miRNA:   3'- -CugCGGC-UCGU--GGUCGUaCGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 207570 0.67 0.827338
Target:  5'- cGCGCCG-GCcuGCUGGCGUGUGC-CAGc -3'
miRNA:   3'- cUGCGGCuCG--UGGUCGUACGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 204936 0.66 0.866346
Target:  5'- -gUGCCGuGGCACCGGCcaGCGCgagACGAa -3'
miRNA:   3'- cuGCGGC-UCGUGGUCGuaCGCG---UGUU- -5'
14235 5' -58.3 NC_003521.1 + 204125 0.66 0.873566
Target:  5'- cACGaaGGGCACCAucaccagcuGCGUGUGCAgAAa -3'
miRNA:   3'- cUGCggCUCGUGGU---------CGUACGCGUgUU- -5'
14235 5' -58.3 NC_003521.1 + 203857 0.67 0.801841
Target:  5'- -cCGCCGAGCACCcGCuccgcUGCG-ACGAc -3'
miRNA:   3'- cuGCGGCUCGUGGuCGu----ACGCgUGUU- -5'
14235 5' -58.3 NC_003521.1 + 203079 0.67 0.835507
Target:  5'- --aGCCGGGgACCAGC---CGCACAGa -3'
miRNA:   3'- cugCGGCUCgUGGUCGuacGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 201386 0.73 0.505273
Target:  5'- cGGCGCCGGGCucgGCCGGCAgcggcauuuucucgGCGCcCAAa -3'
miRNA:   3'- -CUGCGGCUCG---UGGUCGUa-------------CGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 197704 0.67 0.811355
Target:  5'- aGCGCCGAGCGCucgccgCAGCGcuuggucagcucgucGCGCGCGu -3'
miRNA:   3'- cUGCGGCUCGUG------GUCGUa--------------CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 191344 0.66 0.869259
Target:  5'- gGGCGCCGAcgGCCaauaccauaagugugAGCAgaaGCGCGCAGa -3'
miRNA:   3'- -CUGCGGCUcgUGG---------------UCGUa--CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 190983 0.75 0.362589
Target:  5'- cGAgGCCGAGCGgCAGCAgGCGCAgGu -3'
miRNA:   3'- -CUgCGGCUCGUgGUCGUaCGCGUgUu -5'
14235 5' -58.3 NC_003521.1 + 186849 0.68 0.756519
Target:  5'- uGGCgGCCcAGCGgCGGCGUGCaGCACGg -3'
miRNA:   3'- -CUG-CGGcUCGUgGUCGUACG-CGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.