miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 239917 0.67 0.793038
Target:  5'- aACGCCGuGCGCCAGaugGUGCcCAu -3'
miRNA:   3'- cUGCGGCuCGUGGUCguaCGCGuGUu -5'
14235 5' -58.3 NC_003521.1 + 239789 0.68 0.774109
Target:  5'- cGACGCCGgccaucuGGCugCgcGGCGugaUGCGCGCGu -3'
miRNA:   3'- -CUGCGGC-------UCGugG--UCGU---ACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 233296 0.68 0.765827
Target:  5'- aGGCGUCGuucGCAaugccccaaaCAGCGUGCGCGCu- -3'
miRNA:   3'- -CUGCGGCu--CGUg---------GUCGUACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 228740 0.72 0.549602
Target:  5'- uGCGUggUGAGCAgCGGCGUGCGCAUc- -3'
miRNA:   3'- cUGCG--GCUCGUgGUCGUACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 226238 0.69 0.718317
Target:  5'- -gUGCCGuAGC-CCGGCGUGUGCAg-- -3'
miRNA:   3'- cuGCGGC-UCGuGGUCGUACGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 226029 0.72 0.543745
Target:  5'- cGGCGCCGAaccaguccagcaGCACCAGCAccucggccacgaagGCGCGCc- -3'
miRNA:   3'- -CUGCGGCU------------CGUGGUCGUa-------------CGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 225118 0.66 0.861917
Target:  5'- gGAUGCCGAGCGaCAGCAccuggucgacgugguUGCGgACc- -3'
miRNA:   3'- -CUGCGGCUCGUgGUCGU---------------ACGCgUGuu -5'
14235 5' -58.3 NC_003521.1 + 224863 0.67 0.807917
Target:  5'- --gGCCGuagcGCGCCAGCucguccaggugcuugGCGCACAGc -3'
miRNA:   3'- cugCGGCu---CGUGGUCGua-------------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 224551 0.67 0.801841
Target:  5'- cGGCGCCcAGCaggaACCAGCG-GCaGCGCAGc -3'
miRNA:   3'- -CUGCGGcUCG----UGGUCGUaCG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 224319 0.67 0.822355
Target:  5'- --aGCCGAGCGCCgcagcccgugcucguAGCGUcGcCGCACGu -3'
miRNA:   3'- cugCGGCUCGUGG---------------UCGUA-C-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 223224 0.66 0.873567
Target:  5'- uGACGCagguaGAGCcCCugcagcagcgagAGCGUGCGCugGu -3'
miRNA:   3'- -CUGCGg----CUCGuGG------------UCGUACGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 222626 0.67 0.835507
Target:  5'- --gGCCGAcaugugaucgaaGgGCCGGCAgGCGCGCAGc -3'
miRNA:   3'- cugCGGCU------------CgUGGUCGUaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 222489 0.66 0.873567
Target:  5'- cACGCCGAacugguccaacaGCACCAcGCcgcUGgGCACGAa -3'
miRNA:   3'- cUGCGGCU------------CGUGGU-CGu--ACgCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 222251 0.68 0.784096
Target:  5'- --aGUCGAGCGcgcucuCCAGC-UGCGCGCGc -3'
miRNA:   3'- cugCGGCUCGU------GGUCGuACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 220060 0.69 0.678985
Target:  5'- aACGCCaggaaggacAGCACCAGCAgcGCGUACAc -3'
miRNA:   3'- cUGCGGc--------UCGUGGUCGUa-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 219147 0.66 0.866346
Target:  5'- aGACagGCaGGGUACCAGCAgGCGcCGCAGc -3'
miRNA:   3'- -CUG--CGgCUCGUGGUCGUaCGC-GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 218462 0.66 0.851307
Target:  5'- --gGCCG-GCACCAcGcCGUGgGCGCAGu -3'
miRNA:   3'- cugCGGCuCGUGGU-C-GUACgCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 217851 0.66 0.858924
Target:  5'- aGGCGCaGAGCcCCAGCAgcacgacGUGCACc- -3'
miRNA:   3'- -CUGCGgCUCGuGGUCGUa------CGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 217407 0.66 0.858925
Target:  5'- --gGCUGAGCGgCGGCAUGaagccggugcaGCACAGg -3'
miRNA:   3'- cugCGGCUCGUgGUCGUACg----------CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 216195 0.76 0.347197
Target:  5'- aGGCGCUGAGCACCGGCGcgggguccuccUG-GCACAc -3'
miRNA:   3'- -CUGCGGCUCGUGGUCGU-----------ACgCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.