miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14237 3' -55 NC_003521.1 + 62165 0.77 0.473278
Target:  5'- -cGCgGCGcACCUGCUGGGACUGuCACc -3'
miRNA:   3'- gaCGaUGCaUGGAUGACCCUGGC-GUG- -5'
14237 3' -55 NC_003521.1 + 64194 0.67 0.956121
Target:  5'- aCUGCgucaGCaGUACCUGCUGGccaCGCAg -3'
miRNA:   3'- -GACGa---UG-CAUGGAUGACCcugGCGUg -5'
14237 3' -55 NC_003521.1 + 65270 0.69 0.899337
Target:  5'- aCUGCUACGUAaauucaaucacgacaUGCUGGGGgCGCu- -3'
miRNA:   3'- -GACGAUGCAUgg-------------AUGACCCUgGCGug -5'
14237 3' -55 NC_003521.1 + 66686 0.65 0.977294
Target:  5'- uUGCUcaGUACCUcCUGGG-CUGCGa -3'
miRNA:   3'- gACGAugCAUGGAuGACCCuGGCGUg -5'
14237 3' -55 NC_003521.1 + 67159 0.72 0.784892
Target:  5'- -gGCUcCGUACCc-CUGGGucCCGCGCa -3'
miRNA:   3'- gaCGAuGCAUGGauGACCCu-GGCGUG- -5'
14237 3' -55 NC_003521.1 + 67223 0.7 0.844395
Target:  5'- uCUGCUACGUgguGCUcauggcCUGGGACCaGCAg -3'
miRNA:   3'- -GACGAUGCA---UGGau----GACCCUGG-CGUg -5'
14237 3' -55 NC_003521.1 + 85573 0.66 0.974856
Target:  5'- -gGUUGCGgauggaaCUGg-GGGGCCGCACg -3'
miRNA:   3'- gaCGAUGCaug----GAUgaCCCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 86964 0.66 0.974856
Target:  5'- uCUGgaGCaGUACCUGCUGGucugGAgCGCGu -3'
miRNA:   3'- -GACgaUG-CAUGGAUGACC----CUgGCGUg -5'
14237 3' -55 NC_003521.1 + 88279 0.73 0.689414
Target:  5'- -cGCUGcCGUACCUgagcagcguGCUGGGGCUgaGCGCc -3'
miRNA:   3'- gaCGAU-GCAUGGA---------UGACCCUGG--CGUG- -5'
14237 3' -55 NC_003521.1 + 94702 0.7 0.844395
Target:  5'- -cGCUAUGUAUCUACUguuuuuccGGGucCUGCGCg -3'
miRNA:   3'- gaCGAUGCAUGGAUGA--------CCCu-GGCGUG- -5'
14237 3' -55 NC_003521.1 + 98175 0.66 0.974856
Target:  5'- -cGCUGCGccgACC-GCUGaGGCCGCGg -3'
miRNA:   3'- gaCGAUGCa--UGGaUGACcCUGGCGUg -5'
14237 3' -55 NC_003521.1 + 112569 0.66 0.969417
Target:  5'- gCUGCccaccACGgccUACCUGCUGaaccgcGACCGCGCc -3'
miRNA:   3'- -GACGa----UGC---AUGGAUGACc-----CUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 112777 0.7 0.852209
Target:  5'- -cGCcAUGUGCCUGCUGgccgccuacGGGCaCGCGCu -3'
miRNA:   3'- gaCGaUGCAUGGAUGAC---------CCUG-GCGUG- -5'
14237 3' -55 NC_003521.1 + 114628 0.66 0.969417
Target:  5'- ---gUGCGUgGCCUACgugaaccGGGugCGCACc -3'
miRNA:   3'- gacgAUGCA-UGGAUGa------CCCugGCGUG- -5'
14237 3' -55 NC_003521.1 + 116931 0.71 0.807898
Target:  5'- -aGCUACG-GCCUGCUGGGcaacagcguggaCGCGCu -3'
miRNA:   3'- gaCGAUGCaUGGAUGACCCug----------GCGUG- -5'
14237 3' -55 NC_003521.1 + 119760 0.69 0.894863
Target:  5'- -aGCUGgaGUACCagcacacCUGGGACCgGCGCa -3'
miRNA:   3'- gaCGAUg-CAUGGau-----GACCCUGG-CGUG- -5'
14237 3' -55 NC_003521.1 + 121127 0.66 0.969417
Target:  5'- -cGCU--GUACUg---GGGGCCGCGCa -3'
miRNA:   3'- gaCGAugCAUGGaugaCCCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 124230 0.66 0.972232
Target:  5'- -cGCaGCG-ACUUGCaggGaGGGCCGCGCg -3'
miRNA:   3'- gaCGaUGCaUGGAUGa--C-CCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 129535 0.67 0.952264
Target:  5'- -cGCUACaGUGCCcccaGCccgaGGGAgCCGCGCa -3'
miRNA:   3'- gaCGAUG-CAUGGa---UGa---CCCU-GGCGUG- -5'
14237 3' -55 NC_003521.1 + 137504 0.68 0.913262
Target:  5'- -cGCUggcGCGUcagcGCCUGCUGGaGuACCgGCGCg -3'
miRNA:   3'- gaCGA---UGCA----UGGAUGACC-C-UGG-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.