miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14237 3' -55 NC_003521.1 + 2319 0.77 0.473278
Target:  5'- cCUGCUGCGcgccgGCCUcCUGGGGCUGCu- -3'
miRNA:   3'- -GACGAUGCa----UGGAuGACCCUGGCGug -5'
14237 3' -55 NC_003521.1 + 5839 0.72 0.747805
Target:  5'- -cGCU----ACC-GCUGGGACCGCACg -3'
miRNA:   3'- gaCGAugcaUGGaUGACCCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 12753 0.66 0.969417
Target:  5'- -cGCcucggACGUGa--GCUGGGACCcGCGCg -3'
miRNA:   3'- gaCGa----UGCAUggaUGACCCUGG-CGUG- -5'
14237 3' -55 NC_003521.1 + 13715 0.66 0.969417
Target:  5'- -cGCUGC--GCCaggGCUGGGaACCGCuCa -3'
miRNA:   3'- gaCGAUGcaUGGa--UGACCC-UGGCGuG- -5'
14237 3' -55 NC_003521.1 + 16269 0.67 0.952264
Target:  5'- -cGCUGCcgcugGUuCCUGCUGGGcGCCGUg- -3'
miRNA:   3'- gaCGAUG-----CAuGGAUGACCC-UGGCGug -5'
14237 3' -55 NC_003521.1 + 18627 0.66 0.969417
Target:  5'- ----aAgGUGCCUaauaacaacgugGCgUGGGGCCGCACg -3'
miRNA:   3'- gacgaUgCAUGGA------------UG-ACCCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 22966 0.66 0.966403
Target:  5'- gUGCacguCGUG-CUGCUGGGGCUcuGCGCc -3'
miRNA:   3'- gACGau--GCAUgGAUGACCCUGG--CGUG- -5'
14237 3' -55 NC_003521.1 + 27249 0.66 0.963186
Target:  5'- gCUGCUACGUgGCgCUGCUGucGGuCaGCACg -3'
miRNA:   3'- -GACGAUGCA-UG-GAUGAC--CCuGgCGUG- -5'
14237 3' -55 NC_003521.1 + 29476 0.65 0.977294
Target:  5'- gCUGCUGCGggACCccaaccACUcgcgcccgcGGGACCGCc- -3'
miRNA:   3'- -GACGAUGCa-UGGa-----UGA---------CCCUGGCGug -5'
14237 3' -55 NC_003521.1 + 33411 0.71 0.814774
Target:  5'- -gGCUACcgaccaugcgGUACCUaggacuuuugaagcuGCUGGGGCuCGCGCu -3'
miRNA:   3'- gaCGAUG----------CAUGGA---------------UGACCCUG-GCGUG- -5'
14237 3' -55 NC_003521.1 + 34453 0.67 0.95976
Target:  5'- -cGCUGCGgGCCUGg-GGGucgucGCCGCAg -3'
miRNA:   3'- gaCGAUGCaUGGAUgaCCC-----UGGCGUg -5'
14237 3' -55 NC_003521.1 + 36386 0.67 0.952264
Target:  5'- gCUGCUuucCGUG-CUGCUGGcGGCaGCGCg -3'
miRNA:   3'- -GACGAu--GCAUgGAUGACC-CUGgCGUG- -5'
14237 3' -55 NC_003521.1 + 39840 0.67 0.943883
Target:  5'- cCUGCUugGccuCCgGCgUGGGGCuUGCACg -3'
miRNA:   3'- -GACGAugCau-GGaUG-ACCCUG-GCGUG- -5'
14237 3' -55 NC_003521.1 + 42554 0.73 0.718932
Target:  5'- aCUGCUG-GUGCC-GCUGGGACgGCu- -3'
miRNA:   3'- -GACGAUgCAUGGaUGACCCUGgCGug -5'
14237 3' -55 NC_003521.1 + 45142 1.1 0.004555
Target:  5'- gCUGCUACGUACCUACUGGGACCGCACg -3'
miRNA:   3'- -GACGAUGCAUGGAUGACCCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 45266 0.66 0.963186
Target:  5'- gCUGCUG-GUACUgccACUGGcACCGUGCu -3'
miRNA:   3'- -GACGAUgCAUGGa--UGACCcUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 53972 0.67 0.95976
Target:  5'- gUGCUGCacGCCgccGCUGGG-CCGC-Ca -3'
miRNA:   3'- gACGAUGcaUGGa--UGACCCuGGCGuG- -5'
14237 3' -55 NC_003521.1 + 59750 0.77 0.482547
Target:  5'- -aGC-ACGUcACCUACUGGGcCUGCACa -3'
miRNA:   3'- gaCGaUGCA-UGGAUGACCCuGGCGUG- -5'
14237 3' -55 NC_003521.1 + 60684 0.67 0.95976
Target:  5'- gUGCUGCG-GCCgcgcgggggACccgGGGGCgGCGCg -3'
miRNA:   3'- gACGAUGCaUGGa--------UGa--CCCUGgCGUG- -5'
14237 3' -55 NC_003521.1 + 61630 0.69 0.907355
Target:  5'- -cGUUcaGCGccuccgGCUUuCUGGGACCGCACu -3'
miRNA:   3'- gaCGA--UGCa-----UGGAuGACCCUGGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.