miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14237 3' -55 NC_003521.1 + 121127 0.66 0.969417
Target:  5'- -cGCU--GUACUg---GGGGCCGCGCa -3'
miRNA:   3'- gaCGAugCAUGGaugaCCCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 65270 0.69 0.899337
Target:  5'- aCUGCUACGUAaauucaaucacgacaUGCUGGGGgCGCu- -3'
miRNA:   3'- -GACGAUGCAUgg-------------AUGACCCUgGCGug -5'
14237 3' -55 NC_003521.1 + 197140 0.69 0.901221
Target:  5'- uCUGggACGUGgcCCUGCUGGaaguuCCGCGCu -3'
miRNA:   3'- -GACgaUGCAU--GGAUGACCcu---GGCGUG- -5'
14237 3' -55 NC_003521.1 + 240067 0.67 0.943883
Target:  5'- cCUGCUugGccuCCgGCgUGGGGCuUGCACg -3'
miRNA:   3'- -GACGAugCau-GGaUG-ACCCUG-GCGUG- -5'
14237 3' -55 NC_003521.1 + 64194 0.67 0.956121
Target:  5'- aCUGCgucaGCaGUACCUGCUGGccaCGCAg -3'
miRNA:   3'- -GACGa---UG-CAUGGAUGACCcugGCGUg -5'
14237 3' -55 NC_003521.1 + 34453 0.67 0.95976
Target:  5'- -cGCUGCGgGCCUGg-GGGucgucGCCGCAg -3'
miRNA:   3'- gaCGAUGCaUGGAUgaCCC-----UGGCGUg -5'
14237 3' -55 NC_003521.1 + 60684 0.67 0.95976
Target:  5'- gUGCUGCG-GCCgcgcgggggACccgGGGGCgGCGCg -3'
miRNA:   3'- gACGAUGCaUGGa--------UGa--CCCUGgCGUG- -5'
14237 3' -55 NC_003521.1 + 22966 0.66 0.966403
Target:  5'- gUGCacguCGUG-CUGCUGGGGCUcuGCGCc -3'
miRNA:   3'- gACGau--GCAUgGAUGACCCUGG--CGUG- -5'
14237 3' -55 NC_003521.1 + 152357 0.66 0.969417
Target:  5'- gCUGCUcUGggGCCgGCcGGGGCgGCGCg -3'
miRNA:   3'- -GACGAuGCa-UGGaUGaCCCUGgCGUG- -5'
14237 3' -55 NC_003521.1 + 219718 0.69 0.888283
Target:  5'- uUGUgACGUGCgcGgaGGGACCGCGCc -3'
miRNA:   3'- gACGaUGCAUGgaUgaCCCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 194827 0.69 0.888283
Target:  5'- -cGUUACcUACCUACUGGG-CCuCACc -3'
miRNA:   3'- gaCGAUGcAUGGAUGACCCuGGcGUG- -5'
14237 3' -55 NC_003521.1 + 138840 0.69 0.888283
Target:  5'- -gGCUACG-GCCUGCggccagauGGGCUGCACc -3'
miRNA:   3'- gaCGAUGCaUGGAUGac------CCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 202547 0.77 0.473278
Target:  5'- cCUGCUGCGcgccgGCCUcCUGGGGCUGCu- -3'
miRNA:   3'- -GACGAUGCa----UGGAuGACCCUGGCGug -5'
14237 3' -55 NC_003521.1 + 59750 0.77 0.482547
Target:  5'- -aGC-ACGUcACCUACUGGGcCUGCACa -3'
miRNA:   3'- gaCGaUGCA-UGGAUGACCCuGGCGUG- -5'
14237 3' -55 NC_003521.1 + 233063 0.72 0.747805
Target:  5'- uCUGCgGCGU--CUGCUGGGACUGC-Cg -3'
miRNA:   3'- -GACGaUGCAugGAUGACCCUGGCGuG- -5'
14237 3' -55 NC_003521.1 + 67159 0.72 0.784892
Target:  5'- -gGCUcCGUACCc-CUGGGucCCGCGCa -3'
miRNA:   3'- gaCGAuGCAUGGauGACCCu-GGCGUG- -5'
14237 3' -55 NC_003521.1 + 116931 0.71 0.807898
Target:  5'- -aGCUACG-GCCUGCUGGGcaacagcguggaCGCGCu -3'
miRNA:   3'- gaCGAUGCaUGGAUGACCCug----------GCGUG- -5'
14237 3' -55 NC_003521.1 + 67223 0.7 0.844395
Target:  5'- uCUGCUACGUgguGCUcauggcCUGGGACCaGCAg -3'
miRNA:   3'- -GACGAUGCA---UGGau----GACCCUGG-CGUg -5'
14237 3' -55 NC_003521.1 + 94702 0.7 0.844395
Target:  5'- -cGCUAUGUAUCUACUguuuuuccGGGucCUGCGCg -3'
miRNA:   3'- gaCGAUGCAUGGAUGA--------CCCu-GGCGUG- -5'
14237 3' -55 NC_003521.1 + 112777 0.7 0.852209
Target:  5'- -cGCcAUGUGCCUGCUGgccgccuacGGGCaCGCGCu -3'
miRNA:   3'- gaCGaUGCAUGGAUGAC---------CCUG-GCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.