miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14237 3' -55 NC_003521.1 + 45142 1.1 0.004555
Target:  5'- gCUGCUACGUACCUACUGGGACCGCACg -3'
miRNA:   3'- -GACGAUGCAUGGAUGACCCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 221556 0.82 0.283081
Target:  5'- -cGCUACGUAaCUUGCUGGGAUCGgGCg -3'
miRNA:   3'- gaCGAUGCAU-GGAUGACCCUGGCgUG- -5'
14237 3' -55 NC_003521.1 + 2319 0.77 0.473278
Target:  5'- cCUGCUGCGcgccgGCCUcCUGGGGCUGCu- -3'
miRNA:   3'- -GACGAUGCa----UGGAuGACCCUGGCGug -5'
14237 3' -55 NC_003521.1 + 62165 0.77 0.473278
Target:  5'- -cGCgGCGcACCUGCUGGGACUGuCACc -3'
miRNA:   3'- gaCGaUGCaUGGAUGACCCUGGC-GUG- -5'
14237 3' -55 NC_003521.1 + 202547 0.77 0.473278
Target:  5'- cCUGCUGCGcgccgGCCUcCUGGGGCUGCu- -3'
miRNA:   3'- -GACGAUGCa----UGGAuGACCCUGGCGug -5'
14237 3' -55 NC_003521.1 + 59750 0.77 0.482547
Target:  5'- -aGC-ACGUcACCUACUGGGcCUGCACa -3'
miRNA:   3'- gaCGaUGCA-UGGAUGACCCuGGCGUG- -5'
14237 3' -55 NC_003521.1 + 170823 0.76 0.559465
Target:  5'- -cGCUGC--GCUcGCUGGGACUGCACg -3'
miRNA:   3'- gaCGAUGcaUGGaUGACCCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 184848 0.75 0.599252
Target:  5'- -gGCUGCGgccCCUGCacaucggcguggUGGGGCUGCACa -3'
miRNA:   3'- gaCGAUGCau-GGAUG------------ACCCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 168928 0.74 0.629358
Target:  5'- aCUGCguggaGUACCUgcugagcuACUGGGagaGCCGCACg -3'
miRNA:   3'- -GACGaug--CAUGGA--------UGACCC---UGGCGUG- -5'
14237 3' -55 NC_003521.1 + 88279 0.73 0.689414
Target:  5'- -cGCUGcCGUACCUgagcagcguGCUGGGGCUgaGCGCc -3'
miRNA:   3'- gaCGAU-GCAUGGA---------UGACCCUGG--CGUG- -5'
14237 3' -55 NC_003521.1 + 181960 0.73 0.689414
Target:  5'- cCU-CUACGUgggccuuuACCUGCUGGGcauCCGCGCc -3'
miRNA:   3'- -GAcGAUGCA--------UGGAUGACCCu--GGCGUG- -5'
14237 3' -55 NC_003521.1 + 42554 0.73 0.718932
Target:  5'- aCUGCUG-GUGCC-GCUGGGACgGCu- -3'
miRNA:   3'- -GACGAUgCAUGGaUGACCCUGgCGug -5'
14237 3' -55 NC_003521.1 + 5839 0.72 0.747805
Target:  5'- -cGCU----ACC-GCUGGGACCGCACg -3'
miRNA:   3'- gaCGAugcaUGGaUGACCCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 233063 0.72 0.747805
Target:  5'- uCUGCgGCGU--CUGCUGGGACUGC-Cg -3'
miRNA:   3'- -GACGaUGCAugGAUGACCCUGGCGuG- -5'
14237 3' -55 NC_003521.1 + 139305 0.72 0.766579
Target:  5'- -aGCUGCaGcGCCUGCUGGucGGCCGCGu -3'
miRNA:   3'- gaCGAUG-CaUGGAUGACC--CUGGCGUg -5'
14237 3' -55 NC_003521.1 + 210742 0.72 0.766579
Target:  5'- gCUGCUAcCGUgagcgGCCgGCgGGGACgGCACa -3'
miRNA:   3'- -GACGAU-GCA-----UGGaUGaCCCUGgCGUG- -5'
14237 3' -55 NC_003521.1 + 67159 0.72 0.784892
Target:  5'- -gGCUcCGUACCc-CUGGGucCCGCGCa -3'
miRNA:   3'- gaCGAuGCAUGGauGACCCu-GGCGUG- -5'
14237 3' -55 NC_003521.1 + 116931 0.71 0.807898
Target:  5'- -aGCUACG-GCCUGCUGGGcaacagcguggaCGCGCu -3'
miRNA:   3'- gaCGAUGCaUGGAUGACCCug----------GCGUG- -5'
14237 3' -55 NC_003521.1 + 33411 0.71 0.814774
Target:  5'- -gGCUACcgaccaugcgGUACCUaggacuuuugaagcuGCUGGGGCuCGCGCu -3'
miRNA:   3'- gaCGAUG----------CAUGGA---------------UGACCCUG-GCGUG- -5'
14237 3' -55 NC_003521.1 + 67223 0.7 0.844395
Target:  5'- uCUGCUACGUgguGCUcauggcCUGGGACCaGCAg -3'
miRNA:   3'- -GACGAUGCA---UGGau----GACCCUGG-CGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.