miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14239 3' -55 NC_003521.1 + 79634 0.66 0.978756
Target:  5'- --gCGGCGccucgGCGUCGucuGCUGCUGCa -3'
miRNA:   3'- gagGCCGC-----UGCAGCuacUGACGAUGc -5'
14239 3' -55 NC_003521.1 + 85353 0.71 0.860161
Target:  5'- uUCUGGCGGaaccaGaccUCGAcgGGCUGCUGCGa -3'
miRNA:   3'- gAGGCCGCUg----C---AGCUa-CUGACGAUGC- -5'
14239 3' -55 NC_003521.1 + 88456 0.65 0.984626
Target:  5'- gUCCGccuCGGCGUCG--GGCUGCaGCGa -3'
miRNA:   3'- gAGGCc--GCUGCAGCuaCUGACGaUGC- -5'
14239 3' -55 NC_003521.1 + 89965 0.66 0.979622
Target:  5'- uCUCUGGCGGCcguUCGGgguucaaccggcgggUGGC-GCUGCGg -3'
miRNA:   3'- -GAGGCCGCUGc--AGCU---------------ACUGaCGAUGC- -5'
14239 3' -55 NC_003521.1 + 90984 0.67 0.965521
Target:  5'- --gCGGCGaACGcCGAUGcuGCUGUUGCa -3'
miRNA:   3'- gagGCCGC-UGCaGCUAC--UGACGAUGc -5'
14239 3' -55 NC_003521.1 + 96610 0.68 0.955245
Target:  5'- ---aGGCaGGCGUCGgcGcACUGCUGCa -3'
miRNA:   3'- gaggCCG-CUGCAGCuaC-UGACGAUGc -5'
14239 3' -55 NC_003521.1 + 99597 0.72 0.820917
Target:  5'- aCUgCGGCG-CGUUGGUGAcCUGCaGCGc -3'
miRNA:   3'- -GAgGCCGCuGCAGCUACU-GACGaUGC- -5'
14239 3' -55 NC_003521.1 + 111182 0.69 0.918371
Target:  5'- -cCCGGCGACGgcgcCGcgGACgguggGCUggGCGa -3'
miRNA:   3'- gaGGCCGCUGCa---GCuaCUGa----CGA--UGC- -5'
14239 3' -55 NC_003521.1 + 111813 0.67 0.971371
Target:  5'- cCUCUGGCGGCGccagCGAgauCUGgaGCGu -3'
miRNA:   3'- -GAGGCCGCUGCa---GCUacuGACgaUGC- -5'
14239 3' -55 NC_003521.1 + 119043 0.69 0.918371
Target:  5'- -gCgGGCGGCGUCGggGuGCUGgaGCGc -3'
miRNA:   3'- gaGgCCGCUGCAGCuaC-UGACgaUGC- -5'
14239 3' -55 NC_003521.1 + 122530 0.71 0.852673
Target:  5'- -gCCGGCGGCGgUGGUaguGCUGCUGCu -3'
miRNA:   3'- gaGGCCGCUGCaGCUAc--UGACGAUGc -5'
14239 3' -55 NC_003521.1 + 122611 0.66 0.976472
Target:  5'- -cCCGGCGACGgCGgcGGCcGCgcgcucgGCGg -3'
miRNA:   3'- gaGGCCGCUGCaGCuaCUGaCGa------UGC- -5'
14239 3' -55 NC_003521.1 + 122653 0.67 0.965521
Target:  5'- -gCCGGCgGGCGUCGu---CUGCgGCGg -3'
miRNA:   3'- gaGGCCG-CUGCAGCuacuGACGaUGC- -5'
14239 3' -55 NC_003521.1 + 123147 0.65 0.984626
Target:  5'- --aCGGUGAUGaUGGUGguGCUGCUGCu -3'
miRNA:   3'- gagGCCGCUGCaGCUAC--UGACGAUGc -5'
14239 3' -55 NC_003521.1 + 123638 0.68 0.938574
Target:  5'- cCUCgGGCGGCGgcagCGAcGGCggguuagGCUugGa -3'
miRNA:   3'- -GAGgCCGCUGCa---GCUaCUGa------CGAugC- -5'
14239 3' -55 NC_003521.1 + 126724 0.67 0.958876
Target:  5'- aUCCgaGGCGGCGcggUCGgcGACaugGCUGCGu -3'
miRNA:   3'- gAGG--CCGCUGC---AGCuaCUGa--CGAUGC- -5'
14239 3' -55 NC_003521.1 + 127140 0.7 0.874556
Target:  5'- cCUCCaGGCGGCGcagaUCGccGuACUGCUugGa -3'
miRNA:   3'- -GAGG-CCGCUGC----AGCuaC-UGACGAugC- -5'
14239 3' -55 NC_003521.1 + 129562 0.67 0.968543
Target:  5'- --aCGGCGGgccCGaCGAUGGCUGCUcCGc -3'
miRNA:   3'- gagGCCGCU---GCaGCUACUGACGAuGC- -5'
14239 3' -55 NC_003521.1 + 135243 0.68 0.94307
Target:  5'- -gCCGGCGGCGgCGAcGACacgGCgGCGg -3'
miRNA:   3'- gaGGCCGCUGCaGCUaCUGa--CGaUGC- -5'
14239 3' -55 NC_003521.1 + 138815 0.67 0.9623
Target:  5'- cCUCCauGGCG-CGcCuGAUGGCggcgGCUACGg -3'
miRNA:   3'- -GAGG--CCGCuGCaG-CUACUGa---CGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.