miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14239 3' -55 NC_003521.1 + 1319 0.66 0.978756
Target:  5'- -gCCGGCGACGUgGcgcGGCUGUauCGg -3'
miRNA:   3'- gaGGCCGCUGCAgCua-CUGACGauGC- -5'
14239 3' -55 NC_003521.1 + 6489 0.66 0.980872
Target:  5'- gUCCGGCaGCGgaggCGGUGACgGCa--- -3'
miRNA:   3'- gAGGCCGcUGCa---GCUACUGaCGaugc -5'
14239 3' -55 NC_003521.1 + 11559 0.75 0.643762
Target:  5'- cCUCCGGCGcCGUCGugcgccgGACU-CUGCGg -3'
miRNA:   3'- -GAGGCCGCuGCAGCua-----CUGAcGAUGC- -5'
14239 3' -55 NC_003521.1 + 16491 0.67 0.965521
Target:  5'- gUgCGGCGACGcuaCGAgcacgGGCUGCgGCGc -3'
miRNA:   3'- gAgGCCGCUGCa--GCUa----CUGACGaUGC- -5'
14239 3' -55 NC_003521.1 + 17121 0.66 0.974012
Target:  5'- -cCCGGCGAgguCGUCGAUc-CUGCcgGCGc -3'
miRNA:   3'- gaGGCCGCU---GCAGCUAcuGACGa-UGC- -5'
14239 3' -55 NC_003521.1 + 18730 0.69 0.926365
Target:  5'- -gCUGGCGGCGgcgaucguggcggCGGUGgcgccgacgggucGCUGCUGCGa -3'
miRNA:   3'- gaGGCCGCUGCa------------GCUAC-------------UGACGAUGC- -5'
14239 3' -55 NC_003521.1 + 19882 0.66 0.982826
Target:  5'- --aCGGCcGCGUCGGcgcUGAucCUGCUGCu -3'
miRNA:   3'- gagGCCGcUGCAGCU---ACU--GACGAUGc -5'
14239 3' -55 NC_003521.1 + 22960 0.67 0.968543
Target:  5'- gCUCgGGUGcACGUCGu--GCUGCUGgGg -3'
miRNA:   3'- -GAGgCCGC-UGCAGCuacUGACGAUgC- -5'
14239 3' -55 NC_003521.1 + 27359 0.67 0.9623
Target:  5'- -aCCGGCGcCGUC-AUGACgUGCgACGc -3'
miRNA:   3'- gaGGCCGCuGCAGcUACUG-ACGaUGC- -5'
14239 3' -55 NC_003521.1 + 37091 0.67 0.965521
Target:  5'- -aCCGuGCGACaguGUCGccccGGCUGCUGCu -3'
miRNA:   3'- gaGGC-CGCUG---CAGCua--CUGACGAUGc -5'
14239 3' -55 NC_003521.1 + 39316 0.66 0.976472
Target:  5'- aUUCGuCGGCGUCGcgGGCgGCUAgGg -3'
miRNA:   3'- gAGGCcGCUGCAGCuaCUGaCGAUgC- -5'
14239 3' -55 NC_003521.1 + 39453 0.67 0.971371
Target:  5'- -cCCGGCGccgagggccGCGUCGAagGAUUGCggaucgGCGc -3'
miRNA:   3'- gaGGCCGC---------UGCAGCUa-CUGACGa-----UGC- -5'
14239 3' -55 NC_003521.1 + 43940 0.76 0.574783
Target:  5'- uCUUCGGCGACGaucacCGgcGGCUGCUGCu -3'
miRNA:   3'- -GAGGCCGCUGCa----GCuaCUGACGAUGc -5'
14239 3' -55 NC_003521.1 + 44016 1.1 0.006234
Target:  5'- uCUCCGGCGACGUCGAUGACUGCUACGg -3'
miRNA:   3'- -GAGGCCGCUGCAGCUACUGACGAUGC- -5'
14239 3' -55 NC_003521.1 + 53473 0.72 0.810024
Target:  5'- cCUCCaGCGAgcgcuccuucaucaCGUCGAggccGCUGCUGCGg -3'
miRNA:   3'- -GAGGcCGCU--------------GCAGCUac--UGACGAUGC- -5'
14239 3' -55 NC_003521.1 + 61791 0.66 0.980872
Target:  5'- gCUCCGGCGugGaugCGGaaaaGAC-GUUGCGu -3'
miRNA:   3'- -GAGGCCGCugCa--GCUa---CUGaCGAUGC- -5'
14239 3' -55 NC_003521.1 + 72165 0.69 0.928919
Target:  5'- cCUCCGGCGcCGUCGGcaugcccucgaUGACcGUgGCGc -3'
miRNA:   3'- -GAGGCCGCuGCAGCU-----------ACUGaCGaUGC- -5'
14239 3' -55 NC_003521.1 + 76265 0.69 0.918371
Target:  5'- -aCCGGUGGCGagaggaagagUCGcUGccGCUGCUGCGa -3'
miRNA:   3'- gaGGCCGCUGC----------AGCuAC--UGACGAUGC- -5'
14239 3' -55 NC_003521.1 + 76335 0.71 0.837143
Target:  5'- gCUgCGGaGGCGaCGGUGACgGCUGCGg -3'
miRNA:   3'- -GAgGCCgCUGCaGCUACUGaCGAUGC- -5'
14239 3' -55 NC_003521.1 + 76494 0.67 0.971371
Target:  5'- -gCCGG-GACG-CGuggcggcuGUGACUGCUGCu -3'
miRNA:   3'- gaGGCCgCUGCaGC--------UACUGACGAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.