Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14239 | 3' | -55 | NC_003521.1 | + | 235304 | 0.66 | 0.978756 |
Target: 5'- -aCUGGCGACGacaGAUgcGACgGCUACa -3' miRNA: 3'- gaGGCCGCUGCag-CUA--CUGaCGAUGc -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 141363 | 0.67 | 0.965521 |
Target: 5'- gUgCGGCGGCgGUCGGUGACgcgGUgcccgaugACGa -3' miRNA: 3'- gAgGCCGCUG-CAGCUACUGa--CGa-------UGC- -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 22960 | 0.67 | 0.968543 |
Target: 5'- gCUCgGGUGcACGUCGu--GCUGCUGgGg -3' miRNA: 3'- -GAGgCCGC-UGCAGCuacUGACGAUgC- -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 129562 | 0.67 | 0.968543 |
Target: 5'- --aCGGCGGgccCGaCGAUGGCUGCUcCGc -3' miRNA: 3'- gagGCCGCU---GCaGCUACUGACGAuGC- -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 39453 | 0.67 | 0.971371 |
Target: 5'- -cCCGGCGccgagggccGCGUCGAagGAUUGCggaucgGCGc -3' miRNA: 3'- gaGGCCGC---------UGCAGCUa-CUGACGa-----UGC- -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 111813 | 0.67 | 0.971371 |
Target: 5'- cCUCUGGCGGCGccagCGAgauCUGgaGCGu -3' miRNA: 3'- -GAGGCCGCUGCa---GCUacuGACgaUGC- -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 17121 | 0.66 | 0.974012 |
Target: 5'- -cCCGGCGAgguCGUCGAUc-CUGCcgGCGc -3' miRNA: 3'- gaGGCCGCU---GCAGCUAcuGACGa-UGC- -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 239543 | 0.66 | 0.976472 |
Target: 5'- aUUCGuCGGCGUCGcgGGCgGCUAgGg -3' miRNA: 3'- gAGGCcGCUGCAGCuaCUGaCGAUgC- -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 201547 | 0.66 | 0.978756 |
Target: 5'- -gCCGGCGACGUgGcgcGGCUGUauCGg -3' miRNA: 3'- gaGGCCGCUGCAgCua-CUGACGauGC- -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 138815 | 0.67 | 0.9623 |
Target: 5'- cCUCCauGGCG-CGcCuGAUGGCggcgGCUACGg -3' miRNA: 3'- -GAGG--CCGCuGCaG-CUACUGa---CGAUGC- -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 150832 | 0.68 | 0.94307 |
Target: 5'- -cCCGGCgcaacGACGUgGAuuucUGGCUGUUGCa -3' miRNA: 3'- gaGGCCG-----CUGCAgCU----ACUGACGAUGc -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 18730 | 0.69 | 0.926365 |
Target: 5'- -gCUGGCGGCGgcgaucguggcggCGGUGgcgccgacgggucGCUGCUGCGa -3' miRNA: 3'- gaGGCCGCUGCa------------GCUAC-------------UGACGAUGC- -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 43940 | 0.76 | 0.574783 |
Target: 5'- uCUUCGGCGACGaucacCGgcGGCUGCUGCu -3' miRNA: 3'- -GAGGCCGCUGCa----GCuaCUGACGAUGc -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 53473 | 0.72 | 0.810024 |
Target: 5'- cCUCCaGCGAgcgcuccuucaucaCGUCGAggccGCUGCUGCGg -3' miRNA: 3'- -GAGGcCGCU--------------GCAGCUac--UGACGAUGC- -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 99597 | 0.72 | 0.820917 |
Target: 5'- aCUgCGGCG-CGUUGGUGAcCUGCaGCGc -3' miRNA: 3'- -GAgGCCGCuGCAGCUACU-GACGaUGC- -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 142916 | 0.71 | 0.860161 |
Target: 5'- -gCCGGCGACGUCGgcG-UUGCaGCa -3' miRNA: 3'- gaGGCCGCUGCAGCuaCuGACGaUGc -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 168548 | 0.7 | 0.888143 |
Target: 5'- --gCGGCGGCGgCGcUGGCggGCUGCGg -3' miRNA: 3'- gagGCCGCUGCaGCuACUGa-CGAUGC- -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 196724 | 0.7 | 0.894622 |
Target: 5'- -aCCGGCGGCGacggUGGUGGCgGCgGCGc -3' miRNA: 3'- gaGGCCGCUGCa---GCUACUGaCGaUGC- -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 119043 | 0.69 | 0.918371 |
Target: 5'- -gCgGGCGGCGUCGggGuGCUGgaGCGc -3' miRNA: 3'- gaGgCCGCUGCAGCuaC-UGACgaUGC- -5' |
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14239 | 3' | -55 | NC_003521.1 | + | 111182 | 0.69 | 0.918371 |
Target: 5'- -cCCGGCGACGgcgcCGcgGACgguggGCUggGCGa -3' miRNA: 3'- gaGGCCGCUGCa---GCuaCUGa----CGA--UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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