miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14239 3' -55 NC_003521.1 + 44016 1.1 0.006234
Target:  5'- uCUCCGGCGACGUCGAUGACUGCUACGg -3'
miRNA:   3'- -GAGGCCGCUGCAGCUACUGACGAUGC- -5'
14239 3' -55 NC_003521.1 + 150670 0.76 0.573806
Target:  5'- uCUCCGGCGGCGgcgccgcugcugcUgGGUG-CUGCUGCGc -3'
miRNA:   3'- -GAGGCCGCUGC-------------AgCUACuGACGAUGC- -5'
14239 3' -55 NC_003521.1 + 43940 0.76 0.574783
Target:  5'- uCUUCGGCGACGaucacCGgcGGCUGCUGCu -3'
miRNA:   3'- -GAGGCCGCUGCa----GCuaCUGACGAUGc -5'
14239 3' -55 NC_003521.1 + 197003 0.75 0.633878
Target:  5'- -gCCGGCGGCGgcuGAcccGGCUGCUGCGa -3'
miRNA:   3'- gaGGCCGCUGCag-CUa--CUGACGAUGC- -5'
14239 3' -55 NC_003521.1 + 11559 0.75 0.643762
Target:  5'- cCUCCGGCGcCGUCGugcgccgGACU-CUGCGg -3'
miRNA:   3'- -GAGGCCGCuGCAGCua-----CUGAcGAUGC- -5'
14239 3' -55 NC_003521.1 + 198809 0.75 0.643762
Target:  5'- -gCCGGCGGCGUCugucGUGccgccguguuGCUGCUGCGa -3'
miRNA:   3'- gaGGCCGCUGCAGc---UAC----------UGACGAUGC- -5'
14239 3' -55 NC_003521.1 + 169287 0.74 0.683141
Target:  5'- uCUUCGGCGGCGggcUCGGUGACgucgGCcgGCGu -3'
miRNA:   3'- -GAGGCCGCUGC---AGCUACUGa---CGa-UGC- -5'
14239 3' -55 NC_003521.1 + 53473 0.72 0.810024
Target:  5'- cCUCCaGCGAgcgcuccuucaucaCGUCGAggccGCUGCUGCGg -3'
miRNA:   3'- -GAGGcCGCU--------------GCAGCUac--UGACGAUGC- -5'
14239 3' -55 NC_003521.1 + 99597 0.72 0.820917
Target:  5'- aCUgCGGCG-CGUUGGUGAcCUGCaGCGc -3'
miRNA:   3'- -GAgGCCGCuGCAGCUACU-GACGaUGC- -5'
14239 3' -55 NC_003521.1 + 179056 0.71 0.829114
Target:  5'- -gCCGGCGGCGguccCGGUGACggGgaACGg -3'
miRNA:   3'- gaGGCCGCUGCa---GCUACUGa-CgaUGC- -5'
14239 3' -55 NC_003521.1 + 76335 0.71 0.837143
Target:  5'- gCUgCGGaGGCGaCGGUGACgGCUGCGg -3'
miRNA:   3'- -GAgGCCgCUGCaGCUACUGaCGAUGC- -5'
14239 3' -55 NC_003521.1 + 122530 0.71 0.852673
Target:  5'- -gCCGGCGGCGgUGGUaguGCUGCUGCu -3'
miRNA:   3'- gaGGCCGCUGCaGCUAc--UGACGAUGc -5'
14239 3' -55 NC_003521.1 + 142916 0.71 0.860161
Target:  5'- -gCCGGCGACGUCGgcG-UUGCaGCa -3'
miRNA:   3'- gaGGCCGCUGCAGCuaCuGACGaUGc -5'
14239 3' -55 NC_003521.1 + 85353 0.71 0.860161
Target:  5'- uUCUGGCGGaaccaGaccUCGAcgGGCUGCUGCGa -3'
miRNA:   3'- gAGGCCGCUg----C---AGCUa-CUGACGAUGC- -5'
14239 3' -55 NC_003521.1 + 127140 0.7 0.874556
Target:  5'- cCUCCaGGCGGCGcagaUCGccGuACUGCUugGa -3'
miRNA:   3'- -GAGG-CCGCUGC----AGCuaC-UGACGAugC- -5'
14239 3' -55 NC_003521.1 + 168548 0.7 0.888143
Target:  5'- --gCGGCGGCGgCGcUGGCggGCUGCGg -3'
miRNA:   3'- gagGCCGCUGCaGCuACUGa-CGAUGC- -5'
14239 3' -55 NC_003521.1 + 196724 0.7 0.894622
Target:  5'- -aCCGGCGGCGacggUGGUGGCgGCgGCGc -3'
miRNA:   3'- gaGGCCGCUGCa---GCUACUGaCGaUGC- -5'
14239 3' -55 NC_003521.1 + 111182 0.69 0.918371
Target:  5'- -cCCGGCGACGgcgcCGcgGACgguggGCUggGCGa -3'
miRNA:   3'- gaGGCCGCUGCa---GCuaCUGa----CGA--UGC- -5'
14239 3' -55 NC_003521.1 + 119043 0.69 0.918371
Target:  5'- -gCgGGCGGCGUCGggGuGCUGgaGCGc -3'
miRNA:   3'- gaGgCCGCUGCAGCuaC-UGACgaUGC- -5'
14239 3' -55 NC_003521.1 + 76265 0.69 0.918371
Target:  5'- -aCCGGUGGCGagaggaagagUCGcUGccGCUGCUGCGa -3'
miRNA:   3'- gaGGCCGCUGC----------AGCuAC--UGACGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.