miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14249 5' -46.7 NC_003521.1 + 31425 0.69 0.999799
Target:  5'- gGCGUGcaGCAGGCG-GAUGAu-GCGCa -3'
miRNA:   3'- gCGUAC--UGUUUGCaCUGCUuuUGCGa -5'
14249 5' -46.7 NC_003521.1 + 31616 0.68 0.999878
Target:  5'- cCGUcagGUGGCGGAUGgccgguagGugGAAAGCGCc -3'
miRNA:   3'- -GCG---UACUGUUUGCa-------CugCUUUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 33274 1.08 0.041065
Target:  5'- uCGCAUGACAAACGUGACGAAAACGCUc -3'
miRNA:   3'- -GCGUACUGUUUGCACUGCUUUUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 35777 0.69 0.999799
Target:  5'- aGCGUGcGCAGACG-GACGAAAcggauccaucggGCGUc -3'
miRNA:   3'- gCGUAC-UGUUUGCaCUGCUUU------------UGCGa -5'
14249 5' -46.7 NC_003521.1 + 36409 0.67 0.99997
Target:  5'- aGCGccuCGAGCGUGACGGAGAagGCc -3'
miRNA:   3'- gCGUacuGUUUGCACUGCUUUUg-CGa -5'
14249 5' -46.7 NC_003521.1 + 36775 0.77 0.942597
Target:  5'- gCGCGUGGCcuGGCGggcGugGAGGACGCg -3'
miRNA:   3'- -GCGUACUGu-UUGCa--CugCUUUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 37126 0.71 0.998315
Target:  5'- uCGCuacUGGCGGACGUGACGcGGAACa-- -3'
miRNA:   3'- -GCGu--ACUGUUUGCACUGC-UUUUGcga -5'
14249 5' -46.7 NC_003521.1 + 38232 0.76 0.966461
Target:  5'- gGCGgccucGGCGGGCGgGGCGGAGACGCg -3'
miRNA:   3'- gCGUa----CUGUUUGCaCUGCUUUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 38988 0.68 0.999946
Target:  5'- cCGCAgcACAGGCGcugGugGAuguGGCGCUg -3'
miRNA:   3'- -GCGUacUGUUUGCa--CugCUu--UUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 42393 0.72 0.996042
Target:  5'- uCGCGUGGCGuaggaGUGGCGAAccGGCGUc -3'
miRNA:   3'- -GCGUACUGUuug--CACUGCUU--UUGCGa -5'
14249 5' -46.7 NC_003521.1 + 42606 0.68 0.999946
Target:  5'- aGCGcGAC-AGCGUGACGGuacGGGcCGCUg -3'
miRNA:   3'- gCGUaCUGuUUGCACUGCU---UUU-GCGA- -5'
14249 5' -46.7 NC_003521.1 + 43100 0.67 0.999991
Target:  5'- gCGCGcGACGAGC-UGACc-AAGCGCUg -3'
miRNA:   3'- -GCGUaCUGUUUGcACUGcuUUUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 45652 0.68 0.999959
Target:  5'- aGCAaGGCuAugGUGACGA---CGCUa -3'
miRNA:   3'- gCGUaCUGuUugCACUGCUuuuGCGA- -5'
14249 5' -46.7 NC_003521.1 + 47842 0.71 0.998845
Target:  5'- aGUAUGACGAGCGUGcccgccguggcCGAGAACauGCUg -3'
miRNA:   3'- gCGUACUGUUUGCACu----------GCUUUUG--CGA- -5'
14249 5' -46.7 NC_003521.1 + 48119 0.67 0.999988
Target:  5'- uCGCggGACGAGCGcGACGAccugUGCa -3'
miRNA:   3'- -GCGuaCUGUUUGCaCUGCUuuu-GCGa -5'
14249 5' -46.7 NC_003521.1 + 48636 0.67 0.999988
Target:  5'- aGCAgcGCGAgcaGCGUGAUGAAAAC-CUa -3'
miRNA:   3'- gCGUacUGUU---UGCACUGCUUUUGcGA- -5'
14249 5' -46.7 NC_003521.1 + 48991 0.66 0.999998
Target:  5'- gCGC-UGAgGAACGUGcuGCG-GGACGCc -3'
miRNA:   3'- -GCGuACUgUUUGCAC--UGCuUUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 49353 0.69 0.999783
Target:  5'- gCGCGUGugGuggccgggugaggaAGCG-GACGAGaAACGCa -3'
miRNA:   3'- -GCGUACugU--------------UUGCaCUGCUU-UUGCGa -5'
14249 5' -46.7 NC_003521.1 + 54931 0.7 0.999033
Target:  5'- gGCGUgGGCAGAaaaGUGACGGugguguucuccuuGAGCGCa -3'
miRNA:   3'- gCGUA-CUGUUUg--CACUGCU-------------UUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 55388 0.68 0.999929
Target:  5'- gGCGUcacGCAAugGUccACGAAGACGCUg -3'
miRNA:   3'- gCGUAc--UGUUugCAc-UGCUUUUGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.