miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14249 5' -46.7 NC_003521.1 + 1839 0.73 0.991704
Target:  5'- aGCAUGGCGGACGacagaccggGACGggGcccgGCGCc -3'
miRNA:   3'- gCGUACUGUUUGCa--------CUGCuuU----UGCGa -5'
14249 5' -46.7 NC_003521.1 + 3174 0.67 0.99997
Target:  5'- aGgAUGGCAcgcuGCGUGGCGAcAAGgGCa -3'
miRNA:   3'- gCgUACUGUu---UGCACUGCU-UUUgCGa -5'
14249 5' -46.7 NC_003521.1 + 8700 0.66 0.999997
Target:  5'- uCGCAgggaaacgcGACGAuuguuuaauaccGCGUGuaACGggGACGCg -3'
miRNA:   3'- -GCGUa--------CUGUU------------UGCAC--UGCuuUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 9711 0.75 0.977815
Target:  5'- aGUAUGACuauuuauGAUGUGACGAccgaGAAUGCUg -3'
miRNA:   3'- gCGUACUGu------UUGCACUGCU----UUUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 12009 0.67 0.99997
Target:  5'- cCGCAUGcuuCGAAgG-GAgGGGAACGCUc -3'
miRNA:   3'- -GCGUACu--GUUUgCaCUgCUUUUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 14264 0.69 0.999799
Target:  5'- cCGCGgcGCGAuCGUGACGAcAGCGUc -3'
miRNA:   3'- -GCGUacUGUUuGCACUGCUuUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 14860 0.76 0.963077
Target:  5'- gCGCGUGGCcaacAGCGUGACGGAGuuuuucCGCa -3'
miRNA:   3'- -GCGUACUGu---UUGCACUGCUUUu-----GCGa -5'
14249 5' -46.7 NC_003521.1 + 15041 0.68 0.999929
Target:  5'- gGCAcccUGACGAGCG--GCGcGAGCGCg -3'
miRNA:   3'- gCGU---ACUGUUUGCacUGCuUUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 15521 0.73 0.990499
Target:  5'- gGguUGGCGGcggcAUGUGGCGAAcGCGCUg -3'
miRNA:   3'- gCguACUGUU----UGCACUGCUUuUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 16715 0.67 0.999991
Target:  5'- gCGCGUGAU--GCGcGGCGAGuucggcgaccgccGGCGCg -3'
miRNA:   3'- -GCGUACUGuuUGCaCUGCUU-------------UUGCGa -5'
14249 5' -46.7 NC_003521.1 + 16991 0.68 0.999929
Target:  5'- cCGCAggGACAGcaggcgcccGCgGUGGCGGcgGCGCa -3'
miRNA:   3'- -GCGUa-CUGUU---------UG-CACUGCUuuUGCGa -5'
14249 5' -46.7 NC_003521.1 + 17513 0.75 0.980145
Target:  5'- aGCGcGACGAGCGcuGCGAGGACGCc -3'
miRNA:   3'- gCGUaCUGUUUGCacUGCUUUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 19726 0.7 0.999052
Target:  5'- aCGCugcUGACcAGCGUGGCGguGACGg- -3'
miRNA:   3'- -GCGu--ACUGuUUGCACUGCuuUUGCga -5'
14249 5' -46.7 NC_003521.1 + 20091 0.76 0.96962
Target:  5'- cCGCGuUGACGuagGACGUGAUcucaaGGAGACGCUa -3'
miRNA:   3'- -GCGU-ACUGU---UUGCACUG-----CUUUUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 20291 0.76 0.96962
Target:  5'- gGCGaGAgGAACGUGACGGAGAC-CUg -3'
miRNA:   3'- gCGUaCUgUUUGCACUGCUUUUGcGA- -5'
14249 5' -46.7 NC_003521.1 + 20649 0.68 0.999959
Target:  5'- gCGCuggugGGCGccuACGUGAUGAccguGGCGCUg -3'
miRNA:   3'- -GCGua---CUGUu--UGCACUGCUu---UUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 21954 0.66 0.999994
Target:  5'- aGCAgugGGCGAGCGcGGCGGGAcuCGUUc -3'
miRNA:   3'- gCGUa--CUGUUUGCaCUGCUUUu-GCGA- -5'
14249 5' -46.7 NC_003521.1 + 22465 0.66 0.999998
Target:  5'- uCGCuUGGCGAGCGggUGGCGcuauCGCa -3'
miRNA:   3'- -GCGuACUGUUUGC--ACUGCuuuuGCGa -5'
14249 5' -46.7 NC_003521.1 + 30729 0.67 0.999978
Target:  5'- uCGCGUGACcuccgaccuCGUGGgguCGAAAACGUc -3'
miRNA:   3'- -GCGUACUGuuu------GCACU---GCUUUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 31006 0.66 0.999996
Target:  5'- gGC--GACGAcgGCGccGGCGAGGACGCg -3'
miRNA:   3'- gCGuaCUGUU--UGCa-CUGCUUUUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.