Results 1 - 20 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14249 | 5' | -46.7 | NC_003521.1 | + | 33274 | 1.08 | 0.041065 |
Target: 5'- uCGCAUGACAAACGUGACGAAAACGCUc -3' miRNA: 3'- -GCGUACUGUUUGCACUGCUUUUGCGA- -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 58828 | 0.8 | 0.843933 |
Target: 5'- gCGCGUGGCGGcCGUGACGuuacuGGCGCg -3' miRNA: 3'- -GCGUACUGUUuGCACUGCuu---UUGCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 168449 | 0.8 | 0.867953 |
Target: 5'- gGCGUGAaGAGCGUGAUGggG-CGCUg -3' miRNA: 3'- gCGUACUgUUUGCACUGCuuUuGCGA- -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 98360 | 0.79 | 0.896797 |
Target: 5'- gCGCAUGAC-GACGgauucgGGCGAAGugGCg -3' miRNA: 3'- -GCGUACUGuUUGCa-----CUGCUUUugCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 36775 | 0.77 | 0.942597 |
Target: 5'- gCGCGUGGCcuGGCGggcGugGAGGACGCg -3' miRNA: 3'- -GCGUACUGu-UUGCa--CugCUUUUGCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 213383 | 0.77 | 0.942597 |
Target: 5'- uCGCcgAUGACccaGAGCGUGAUGAAgaaGACGCUg -3' miRNA: 3'- -GCG--UACUG---UUUGCACUGCUU---UUGCGA- -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 14860 | 0.76 | 0.963077 |
Target: 5'- gCGCGUGGCcaacAGCGUGACGGAGuuuuucCGCa -3' miRNA: 3'- -GCGUACUGu---UUGCACUGCUUUu-----GCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 38232 | 0.76 | 0.966461 |
Target: 5'- gGCGgccucGGCGGGCGgGGCGGAGACGCg -3' miRNA: 3'- gCGUa----CUGUUUGCaCUGCUUUUGCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 238460 | 0.76 | 0.966461 |
Target: 5'- gGCGgccucGGCGGGCGgGGCGGAGACGCg -3' miRNA: 3'- gCGUa----CUGUUUGCaCUGCUUUUGCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 171683 | 0.76 | 0.969314 |
Target: 5'- gGCAUGACGAgcaacaaGCGUGACGAcaaacAACGUc -3' miRNA: 3'- gCGUACUGUU-------UGCACUGCUu----UUGCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 20091 | 0.76 | 0.96962 |
Target: 5'- cCGCGuUGACGuagGACGUGAUcucaaGGAGACGCUa -3' miRNA: 3'- -GCGU-ACUGU---UUGCACUG-----CUUUUGCGA- -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 125454 | 0.76 | 0.96962 |
Target: 5'- uGCGUcuCGGACGUGGCGAAcGCGCc -3' miRNA: 3'- gCGUAcuGUUUGCACUGCUUuUGCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 20291 | 0.76 | 0.96962 |
Target: 5'- gGCGaGAgGAACGUGACGGAGAC-CUg -3' miRNA: 3'- gCGUaCUgUUUGCACUGCUUUUGcGA- -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 9711 | 0.75 | 0.977815 |
Target: 5'- aGUAUGACuauuuauGAUGUGACGAccgaGAAUGCUg -3' miRNA: 3'- gCGUACUGu------UUGCACUGCU----UUUGCGA- -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 17513 | 0.75 | 0.980145 |
Target: 5'- aGCGcGACGAGCGcuGCGAGGACGCc -3' miRNA: 3'- gCGUaCUGUUUGCacUGCUUUUGCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 127529 | 0.74 | 0.985873 |
Target: 5'- aGCGUGAauuugccCGAGCGcgGAgCGAAGACGCUg -3' miRNA: 3'- gCGUACU-------GUUUGCa-CU-GCUUUUGCGA- -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 204731 | 0.74 | 0.986045 |
Target: 5'- aGgGUGGCGaggGugGUGAUGGAGGCGCc -3' miRNA: 3'- gCgUACUGU---UugCACUGCUUUUGCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 196727 | 0.74 | 0.98916 |
Target: 5'- gGCGgcGACGGugGUGGCGGcgGCGCc -3' miRNA: 3'- gCGUa-CUGUUugCACUGCUuuUGCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 224690 | 0.74 | 0.98916 |
Target: 5'- gGCGUGGCGcccgGGCGUGugGAAGuucACGUc -3' miRNA: 3'- gCGUACUGU----UUGCACugCUUU---UGCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 15521 | 0.73 | 0.990499 |
Target: 5'- gGguUGGCGGcggcAUGUGGCGAAcGCGCUg -3' miRNA: 3'- gCguACUGUU----UGCACUGCUUuUGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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