miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14249 5' -46.7 NC_003521.1 + 116993 0.71 0.998845
Target:  5'- gCGCuacGACAAgcagcuggucgGCGUGACG-GAGCGCg -3'
miRNA:   3'- -GCGua-CUGUU-----------UGCACUGCuUUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 202066 0.73 0.991704
Target:  5'- aGCAUGGCGGACGacagaccggGACGggGcccgGCGCc -3'
miRNA:   3'- gCGUACUGUUUGCa--------CUGCuuU----UGCGa -5'
14249 5' -46.7 NC_003521.1 + 42393 0.72 0.996042
Target:  5'- uCGCGUGGCGuaggaGUGGCGAAccGGCGUc -3'
miRNA:   3'- -GCGUACUGUuug--CACUGCUU--UUGCGa -5'
14249 5' -46.7 NC_003521.1 + 224802 0.72 0.996042
Target:  5'- uGCggGACGcGCGUGGCGuAGGGCGUc -3'
miRNA:   3'- gCGuaCUGUuUGCACUGC-UUUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 58411 0.72 0.996042
Target:  5'- cCGCGUGAUGcGGCGguUGACGAAgccgcAGCGCUg -3'
miRNA:   3'- -GCGUACUGU-UUGC--ACUGCUU-----UUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 83671 0.72 0.997146
Target:  5'- gCGCAcguUGACcucgcGCGUGACGuuguGGACGCg -3'
miRNA:   3'- -GCGU---ACUGuu---UGCACUGCu---UUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 171483 0.72 0.997146
Target:  5'- aCGCAgGACuuGCaGUGACGG--ACGCUg -3'
miRNA:   3'- -GCGUaCUGuuUG-CACUGCUuuUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 128812 0.71 0.997594
Target:  5'- gCGCGUGAgGAACuUGACGAuguaguCGCg -3'
miRNA:   3'- -GCGUACUgUUUGcACUGCUuuu---GCGa -5'
14249 5' -46.7 NC_003521.1 + 47842 0.71 0.998845
Target:  5'- aGUAUGACGAGCGUGcccgccguggcCGAGAACauGCUg -3'
miRNA:   3'- gCGUACUGUUUGCACu----------GCUUUUG--CGA- -5'
14249 5' -46.7 NC_003521.1 + 224690 0.74 0.98916
Target:  5'- gGCGUGGCGcccgGGCGUGugGAAGuucACGUc -3'
miRNA:   3'- gCGUACUGU----UUGCACugCUUU---UGCGa -5'
14249 5' -46.7 NC_003521.1 + 196727 0.74 0.98916
Target:  5'- gGCGgcGACGGugGUGGCGGcgGCGCc -3'
miRNA:   3'- gCGUa-CUGUUugCACUGCUuuUGCGa -5'
14249 5' -46.7 NC_003521.1 + 9711 0.75 0.977815
Target:  5'- aGUAUGACuauuuauGAUGUGACGAccgaGAAUGCUg -3'
miRNA:   3'- gCGUACUGu------UUGCACUGCU----UUUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 168449 0.8 0.867953
Target:  5'- gGCGUGAaGAGCGUGAUGggG-CGCUg -3'
miRNA:   3'- gCGUACUgUUUGCACUGCuuUuGCGA- -5'
14249 5' -46.7 NC_003521.1 + 98360 0.79 0.896797
Target:  5'- gCGCAUGAC-GACGgauucgGGCGAAGugGCg -3'
miRNA:   3'- -GCGUACUGuUUGCa-----CUGCUUUugCGa -5'
14249 5' -46.7 NC_003521.1 + 36775 0.77 0.942597
Target:  5'- gCGCGUGGCcuGGCGggcGugGAGGACGCg -3'
miRNA:   3'- -GCGUACUGu-UUGCa--CugCUUUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 213383 0.77 0.942597
Target:  5'- uCGCcgAUGACccaGAGCGUGAUGAAgaaGACGCUg -3'
miRNA:   3'- -GCG--UACUG---UUUGCACUGCUU---UUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 238460 0.76 0.966461
Target:  5'- gGCGgccucGGCGGGCGgGGCGGAGACGCg -3'
miRNA:   3'- gCGUa----CUGUUUGCaCUGCUUUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 125454 0.76 0.96962
Target:  5'- uGCGUcuCGGACGUGGCGAAcGCGCc -3'
miRNA:   3'- gCGUAcuGUUUGCACUGCUUuUGCGa -5'
14249 5' -46.7 NC_003521.1 + 20091 0.76 0.96962
Target:  5'- cCGCGuUGACGuagGACGUGAUcucaaGGAGACGCUa -3'
miRNA:   3'- -GCGU-ACUGU---UUGCACUG-----CUUUUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 20291 0.76 0.96962
Target:  5'- gGCGaGAgGAACGUGACGGAGAC-CUg -3'
miRNA:   3'- gCGUaCUgUUUGCACUGCUUUUGcGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.