Results 1 - 20 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14249 | 5' | -46.7 | NC_003521.1 | + | 163465 | 0.66 | 0.999998 |
Target: 5'- gCGCAUGACugaggaugaugAGACcgggGGCGAAAGCGa- -3' miRNA: 3'- -GCGUACUG-----------UUUGca--CUGCUUUUGCga -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 157042 | 0.66 | 0.999998 |
Target: 5'- gCGCGgucgGAgGAGCGcGGCGggGgGCGCc -3' miRNA: 3'- -GCGUa---CUgUUUGCaCUGCuuU-UGCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 235581 | 0.66 | 0.999994 |
Target: 5'- cCGCggGACGuGCGggagGACGAGAG-GCg -3' miRNA: 3'- -GCGuaCUGUuUGCa---CUGCUUUUgCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 22465 | 0.66 | 0.999998 |
Target: 5'- uCGCuUGGCGAGCGggUGGCGcuauCGCa -3' miRNA: 3'- -GCGuACUGUUUGC--ACUGCuuuuGCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 188098 | 0.66 | 0.999995 |
Target: 5'- gGCGUGACGAugGgacccGACGGAGgacacacugguggaGCgGCUg -3' miRNA: 3'- gCGUACUGUUugCa----CUGCUUU--------------UG-CGA- -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 31006 | 0.66 | 0.999996 |
Target: 5'- gGC--GACGAcgGCGccGGCGAGGACGCg -3' miRNA: 3'- gCGuaCUGUU--UGCa-CUGCUUUUGCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 192804 | 0.66 | 0.999994 |
Target: 5'- aGCAUaACcAACGUGACGGuGAACGg- -3' miRNA: 3'- gCGUAcUGuUUGCACUGCU-UUUGCga -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 110147 | 0.66 | 0.999994 |
Target: 5'- -cCGUGuccGCGAACGUGACGcuGAgGCg -3' miRNA: 3'- gcGUAC---UGUUUGCACUGCuuUUgCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 144060 | 0.66 | 0.999996 |
Target: 5'- uGCAUGGcCGAGC-UGGCG---GCGCUg -3' miRNA: 3'- gCGUACU-GUUUGcACUGCuuuUGCGA- -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 168500 | 0.66 | 0.999996 |
Target: 5'- gGCGaGACGgaGGCGgagGACGgcGACGCc -3' miRNA: 3'- gCGUaCUGU--UUGCa--CUGCuuUUGCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 132393 | 0.66 | 0.999996 |
Target: 5'- aUGCA-GACAGACGgGGCGGggucccugcAAugGCa -3' miRNA: 3'- -GCGUaCUGUUUGCaCUGCU---------UUugCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 186927 | 0.66 | 0.999996 |
Target: 5'- uGCAgGACGAgcGCGUGACugucguuGCGCa -3' miRNA: 3'- gCGUaCUGUU--UGCACUGcuuu---UGCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 123851 | 0.66 | 0.999996 |
Target: 5'- gCGCAgcuugGGCAGGCGcucGCGAauguaGAGCGCg -3' miRNA: 3'- -GCGUa----CUGUUUGCac-UGCU-----UUUGCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 77231 | 0.66 | 0.999997 |
Target: 5'- aGCGUGACGcuguaGACGUcGGCGggGuccACGg- -3' miRNA: 3'- gCGUACUGU-----UUGCA-CUGCuuU---UGCga -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 21954 | 0.66 | 0.999994 |
Target: 5'- aGCAgugGGCGAGCGcGGCGGGAcuCGUUc -3' miRNA: 3'- gCGUa--CUGUUUGCaCUGCUUUu-GCGA- -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 236918 | 0.66 | 0.999996 |
Target: 5'- aCGCcUGAagaaaGAGCGUGccGCGAGccuacGGCGCUa -3' miRNA: 3'- -GCGuACUg----UUUGCAC--UGCUU-----UUGCGA- -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 193104 | 0.66 | 0.999994 |
Target: 5'- gGCGUcGACAAugcCGUcuGACGucAACGCUg -3' miRNA: 3'- gCGUA-CUGUUu--GCA--CUGCuuUUGCGA- -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 80306 | 0.66 | 0.999994 |
Target: 5'- uGCugGUGACGGugGUGcUGGAGcuGCGCg -3' miRNA: 3'- gCG--UACUGUUugCACuGCUUU--UGCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 162336 | 0.66 | 0.999994 |
Target: 5'- cCGCAggcGGCGAcuGCG-GGCGugGGCGCg -3' miRNA: 3'- -GCGUa--CUGUU--UGCaCUGCuuUUGCGa -5' |
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14249 | 5' | -46.7 | NC_003521.1 | + | 168910 | 0.66 | 0.999997 |
Target: 5'- cCGUAggGGUAGACGUGAUgcgagGAGGGCGCa -3' miRNA: 3'- -GCGUa-CUGUUUGCACUG-----CUUUUGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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