miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14252 3' -56.4 NC_003521.1 + 29067 1.11 0.003821
Target:  5'- gCCGGACAUCUCGGGCUACGCAGUGGAg -3'
miRNA:   3'- -GGCCUGUAGAGCCCGAUGCGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 162714 0.83 0.207512
Target:  5'- -aGGuguACAUCUCGGGCUGCGUGGUGGu -3'
miRNA:   3'- ggCC---UGUAGAGCCCGAUGCGUCACCu -5'
14252 3' -56.4 NC_003521.1 + 21935 0.81 0.293174
Target:  5'- gCGGGCGgcCUCGGGCUGgaGCAGUGGGc -3'
miRNA:   3'- gGCCUGUa-GAGCCCGAUg-CGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 160317 0.72 0.741261
Target:  5'- aCGGcCAUCggagccgUGGGCgGCGCGGUGGc -3'
miRNA:   3'- gGCCuGUAGa------GCCCGaUGCGUCACCu -5'
14252 3' -56.4 NC_003521.1 + 204863 0.71 0.759732
Target:  5'- cCCGGA--UCUCGGGC-ACGCAGg--- -3'
miRNA:   3'- -GGCCUguAGAGCCCGaUGCGUCaccu -5'
14252 3' -56.4 NC_003521.1 + 100245 0.71 0.786639
Target:  5'- gCCGGccGCGaaaucCUCGGGCgGCGCcugGGUGGAg -3'
miRNA:   3'- -GGCC--UGUa----GAGCCCGaUGCG---UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 127862 0.7 0.803953
Target:  5'- gCGGcauguaguagcGCAUCUCGGGCggguCGCGGUaGGc -3'
miRNA:   3'- gGCC-----------UGUAGAGCCCGau--GCGUCA-CCu -5'
14252 3' -56.4 NC_003521.1 + 92080 0.7 0.820694
Target:  5'- aCCGGGgGUCggGGGgUGCGCAG-GGc -3'
miRNA:   3'- -GGCCUgUAGagCCCgAUGCGUCaCCu -5'
14252 3' -56.4 NC_003521.1 + 131044 0.7 0.836806
Target:  5'- cCUGGGCGgcggCggCGGGCcucuggACGCGGUGGc -3'
miRNA:   3'- -GGCCUGUa---Ga-GCCCGa-----UGCGUCACCu -5'
14252 3' -56.4 NC_003521.1 + 167166 0.7 0.836806
Target:  5'- cUCGGGCGUCUUGgaGGCggcCGCGGcGGAg -3'
miRNA:   3'- -GGCCUGUAGAGC--CCGau-GCGUCaCCU- -5'
14252 3' -56.4 NC_003521.1 + 213309 0.7 0.844609
Target:  5'- gUGGGCGcCUCGGGCcgcACGCcccccGUGGAg -3'
miRNA:   3'- gGCCUGUaGAGCCCGa--UGCGu----CACCU- -5'
14252 3' -56.4 NC_003521.1 + 120760 0.69 0.852235
Target:  5'- aCGGACcugaacGUCaaGGGgcaCUGCGCGGUGGGc -3'
miRNA:   3'- gGCCUG------UAGagCCC---GAUGCGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 192667 0.69 0.859677
Target:  5'- uUGGGCGUCUUGGGCU-CGCcgauGUacacGGAg -3'
miRNA:   3'- gGCCUGUAGAGCCCGAuGCGu---CA----CCU- -5'
14252 3' -56.4 NC_003521.1 + 122689 0.69 0.859677
Target:  5'- gCCGGugAUCaUGGGCgucucgGCGgGGcUGGAg -3'
miRNA:   3'- -GGCCugUAGaGCCCGa-----UGCgUC-ACCU- -5'
14252 3' -56.4 NC_003521.1 + 163651 0.69 0.864052
Target:  5'- cUCGGugcGCGUCUCGGuGCUGCGgagcugcucaacaAGUGGGu -3'
miRNA:   3'- -GGCC---UGUAGAGCC-CGAUGCg------------UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 222106 0.69 0.86693
Target:  5'- gCCGGcaGCGUCUCGaGGCgcUGCGCcG-GGAa -3'
miRNA:   3'- -GGCC--UGUAGAGC-CCG--AUGCGuCaCCU- -5'
14252 3' -56.4 NC_003521.1 + 5547 0.69 0.876758
Target:  5'- gCGGcGCGUCguuccucccgguugCGGGCUcgGCGGUGGAa -3'
miRNA:   3'- gGCC-UGUAGa-------------GCCCGAugCGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 105628 0.69 0.876758
Target:  5'- -aGGGCGUgCUCGGGCgugUGCGUgaagcccagcucgggGGUGGGc -3'
miRNA:   3'- ggCCUGUA-GAGCCCG---AUGCG---------------UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 125822 0.69 0.88085
Target:  5'- gCCGuaaACGUCugcgcgUCGGGCU-CGCGGUGGu -3'
miRNA:   3'- -GGCc--UGUAG------AGCCCGAuGCGUCACCu -5'
14252 3' -56.4 NC_003521.1 + 224408 0.68 0.887508
Target:  5'- gCCGGuACAcCUCgccggccaGGcGCUGCGUGGUGGGc -3'
miRNA:   3'- -GGCC-UGUaGAG--------CC-CGAUGCGUCACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.