miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14252 3' -56.4 NC_003521.1 + 97 0.66 0.953753
Target:  5'- gUCGGACGUguUUCGGGCcggcgggucguCGCGG-GGAc -3'
miRNA:   3'- -GGCCUGUA--GAGCCCGau---------GCGUCaCCU- -5'
14252 3' -56.4 NC_003521.1 + 5547 0.69 0.876758
Target:  5'- gCGGcGCGUCguuccucccgguugCGGGCUcgGCGGUGGAa -3'
miRNA:   3'- gGCC-UGUAGa-------------GCCCGAugCGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 7756 0.66 0.954507
Target:  5'- gCCGGACugcugAUCaUUGuGGCUuCGCuAGUGGGa -3'
miRNA:   3'- -GGCCUG-----UAG-AGC-CCGAuGCG-UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 21935 0.81 0.293174
Target:  5'- gCGGGCGgcCUCGGGCUGgaGCAGUGGGc -3'
miRNA:   3'- gGCCUGUa-GAGCCCGAUg-CGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 29067 1.11 0.003821
Target:  5'- gCCGGACAUCUCGGGCUACGCAGUGGAg -3'
miRNA:   3'- -GGCCUGUAGAGCCCGAUGCGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 32115 0.66 0.964831
Target:  5'- gCGcGGCugAUCUCGGGCagguagcggGCGCGGUGc- -3'
miRNA:   3'- gGC-CUG--UAGAGCCCGa--------UGCGUCACcu -5'
14252 3' -56.4 NC_003521.1 + 39566 0.67 0.946587
Target:  5'- gCCGGcCAUCU--GGCUGCGCGGcGuGAu -3'
miRNA:   3'- -GGCCuGUAGAgcCCGAUGCGUCaC-CU- -5'
14252 3' -56.4 NC_003521.1 + 60127 0.67 0.933093
Target:  5'- aUGGGCAUCUugUGGGUUcGCGUuuugguaaccuGGUGGAu -3'
miRNA:   3'- gGCCUGUAGA--GCCCGA-UGCG-----------UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 78656 0.67 0.928158
Target:  5'- --cGAUGUCgUCGGGCUucucgGCGCAGgGGAa -3'
miRNA:   3'- ggcCUGUAG-AGCCCGA-----UGCGUCaCCU- -5'
14252 3' -56.4 NC_003521.1 + 92080 0.7 0.820694
Target:  5'- aCCGGGgGUCggGGGgUGCGCAG-GGc -3'
miRNA:   3'- -GGCCUgUAGagCCCgAUGCGUCaCCu -5'
14252 3' -56.4 NC_003521.1 + 98441 0.66 0.964831
Target:  5'- gCCGcGGCcUCcUGGGCUACGU--UGGAg -3'
miRNA:   3'- -GGC-CUGuAGaGCCCGAUGCGucACCU- -5'
14252 3' -56.4 NC_003521.1 + 100245 0.71 0.786639
Target:  5'- gCCGGccGCGaaaucCUCGGGCgGCGCcugGGUGGAg -3'
miRNA:   3'- -GGCC--UGUa----GAGCCCGaUGCG---UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 105628 0.69 0.876758
Target:  5'- -aGGGCGUgCUCGGGCgugUGCGUgaagcccagcucgggGGUGGGc -3'
miRNA:   3'- ggCCUGUA-GAGCCCG---AUGCG---------------UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 109449 0.67 0.937809
Target:  5'- gUGGGCAcggUCUCGGGUauggGCGCGucugGGAa -3'
miRNA:   3'- gGCCUGU---AGAGCCCGa---UGCGUca--CCU- -5'
14252 3' -56.4 NC_003521.1 + 112375 0.67 0.927652
Target:  5'- gCUGcGGCGUCUCGuccaccuGGCUgGCGCAGUGc- -3'
miRNA:   3'- -GGC-CUGUAGAGC-------CCGA-UGCGUCACcu -5'
14252 3' -56.4 NC_003521.1 + 117413 0.67 0.928157
Target:  5'- aCCGGguggagggcgGCAUCUCGGGUccGCGCGGc--- -3'
miRNA:   3'- -GGCC----------UGUAGAGCCCGa-UGCGUCaccu -5'
14252 3' -56.4 NC_003521.1 + 120760 0.69 0.852235
Target:  5'- aCGGACcugaacGUCaaGGGgcaCUGCGCGGUGGGc -3'
miRNA:   3'- gGCCUG------UAGagCCC---GAUGCGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 122689 0.69 0.859677
Target:  5'- gCCGGugAUCaUGGGCgucucgGCGgGGcUGGAg -3'
miRNA:   3'- -GGCCugUAGaGCCCGa-----UGCgUC-ACCU- -5'
14252 3' -56.4 NC_003521.1 + 123169 0.67 0.942306
Target:  5'- gCCGGcgcacCGUCUCGcGGCgcaguCGCAGgcGGAa -3'
miRNA:   3'- -GGCCu----GUAGAGC-CCGau---GCGUCa-CCU- -5'
14252 3' -56.4 NC_003521.1 + 125822 0.69 0.88085
Target:  5'- gCCGuaaACGUCugcgcgUCGGGCU-CGCGGUGGu -3'
miRNA:   3'- -GGCc--UGUAG------AGCCCGAuGCGUCACCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.