Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 103425 | 0.79 | 0.273556 |
Target: 5'- gCGUCgAcGUGCGUGAgcUCCGCCaggucGCGGCGg -3' miRNA: 3'- -GCAGgU-CACGCACU--AGGCGG-----UGCCGC- -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 102005 | 0.73 | 0.513933 |
Target: 5'- uGUCCAGgcacaggGCGUGGUugagcaCCuggGCCACGGCGc -3' miRNA: 3'- gCAGGUCa------CGCACUA------GG---CGGUGCCGC- -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 124434 | 0.72 | 0.589377 |
Target: 5'- uCGUCCGGcgaGaCGUGGUUgGgCCGCGGCGg -3' miRNA: 3'- -GCAGGUCa--C-GCACUAGgC-GGUGCCGC- -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 92496 | 0.72 | 0.608622 |
Target: 5'- -cUCCGG-GCGUGGUCCGCCACc--- -3' miRNA: 3'- gcAGGUCaCGCACUAGGCGGUGccgc -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 116767 | 0.71 | 0.656896 |
Target: 5'- uGUgCA--GCGUGGgccgCCGCCGCGGCa -3' miRNA: 3'- gCAgGUcaCGCACUa---GGCGGUGCCGc -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 142324 | 0.71 | 0.656896 |
Target: 5'- uCGUCgCaacugGGUGCGcGAggccgCCGCCACGGCc -3' miRNA: 3'- -GCAG-G-----UCACGCaCUa----GGCGGUGCCGc -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 115391 | 0.7 | 0.72352 |
Target: 5'- uGUgCAGgGCGcGGgcggCCGCCACGGCc -3' miRNA: 3'- gCAgGUCaCGCaCUa---GGCGGUGCCGc -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 140473 | 0.69 | 0.751175 |
Target: 5'- cCGUCC---GCGUGGcUUCGCCGCGGUu -3' miRNA: 3'- -GCAGGucaCGCACU-AGGCGGUGCCGc -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 166231 | 0.69 | 0.786707 |
Target: 5'- gGUagaAGaGCGUGAUgCCGCC-CGGCGa -3' miRNA: 3'- gCAgg-UCaCGCACUA-GGCGGuGCCGC- -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 88441 | 0.67 | 0.858728 |
Target: 5'- -cUCCAGggaGaCGUcGUCCGCCuCGGCGu -3' miRNA: 3'- gcAGGUCa--C-GCAcUAGGCGGuGCCGC- -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 121339 | 0.68 | 0.836148 |
Target: 5'- aCGUCCAGcaUGaCGUGcgCCGUCuugccCGGCu -3' miRNA: 3'- -GCAGGUC--AC-GCACuaGGCGGu----GCCGc -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 111712 | 0.68 | 0.836148 |
Target: 5'- aCGUCCAGUcCGUGcgCCGgCACGcCa -3' miRNA: 3'- -GCAGGUCAcGCACuaGGCgGUGCcGc -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 111589 | 0.68 | 0.820258 |
Target: 5'- -uUCCGGacUGCGUGGUagucuuccucUCGCCccGCGGCGa -3' miRNA: 3'- gcAGGUC--ACGCACUA----------GGCGG--UGCCGC- -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 228732 | 0.68 | 0.812082 |
Target: 5'- uGUCgGGcUGCGUGGUgaGCaGCGGCGu -3' miRNA: 3'- gCAGgUC-ACGCACUAggCGgUGCCGC- -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 119308 | 0.68 | 0.803759 |
Target: 5'- cCGUCCAGgugagGCGgauggUGAUgCGCaCGCGGuCGg -3' miRNA: 3'- -GCAGGUCa----CGC-----ACUAgGCG-GUGCC-GC- -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 179117 | 0.69 | 0.786707 |
Target: 5'- gCGUa-GGUGCaUGAccUCCGCCGCGGUu -3' miRNA: 3'- -GCAggUCACGcACU--AGGCGGUGCCGc -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 139415 | 0.66 | 0.907161 |
Target: 5'- -uUCCAGccgcacgggcucuccUGCGUGG-CCGUCaaGCGGCGc -3' miRNA: 3'- gcAGGUC---------------ACGCACUaGGCGG--UGCCGC- -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 163226 | 0.79 | 0.250031 |
Target: 5'- gCGcCCGGUGaCGUGGguUCgGCCACGGCGg -3' miRNA: 3'- -GCaGGUCAC-GCACU--AGgCGGUGCCGC- -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 170058 | 0.76 | 0.39314 |
Target: 5'- -uUCCAcGUGCagcugGUGAUCgGCCGCGGCGc -3' miRNA: 3'- gcAGGU-CACG-----CACUAGgCGGUGCCGC- -5' |
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14252 | 5' | -58.8 | NC_003521.1 | + | 112364 | 0.76 | 0.409268 |
Target: 5'- uGcCCAugGaCGUGAUCCGCCugGGCGa -3' miRNA: 3'- gCaGGUcaC-GCACUAGGCGGugCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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