miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14252 5' -58.8 NC_003521.1 + 138014 0.67 0.879668
Target:  5'- gCGUCgAGgugcGCGUGcgUCGCUGcCGGCGc -3'
miRNA:   3'- -GCAGgUCa---CGCACuaGGCGGU-GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 228732 0.68 0.812082
Target:  5'- uGUCgGGcUGCGUGGUgaGCaGCGGCGu -3'
miRNA:   3'- gCAGgUC-ACGCACUAggCGgUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 111589 0.68 0.820258
Target:  5'- -uUCCGGacUGCGUGGUagucuuccucUCGCCccGCGGCGa -3'
miRNA:   3'- gcAGGUC--ACGCACUA----------GGCGG--UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 111712 0.68 0.836148
Target:  5'- aCGUCCAGUcCGUGcgCCGgCACGcCa -3'
miRNA:   3'- -GCAGGUCAcGCACuaGGCgGUGCcGc -5'
14252 5' -58.8 NC_003521.1 + 121339 0.68 0.836148
Target:  5'- aCGUCCAGcaUGaCGUGcgCCGUCuugccCGGCu -3'
miRNA:   3'- -GCAGGUC--AC-GCACuaGGCGGu----GCCGc -5'
14252 5' -58.8 NC_003521.1 + 88441 0.67 0.858728
Target:  5'- -cUCCAGggaGaCGUcGUCCGCCuCGGCGu -3'
miRNA:   3'- gcAGGUCa--C-GCAcUAGGCGGuGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 17483 0.67 0.858728
Target:  5'- aCGgcaCCGGUaGCG-GcgCCGCCggucACGGCGg -3'
miRNA:   3'- -GCa--GGUCA-CGCaCuaGGCGG----UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 4332 0.67 0.879668
Target:  5'- cCGUCCA-UGCcUGGcgccaCCGCCGcCGGCGg -3'
miRNA:   3'- -GCAGGUcACGcACUa----GGCGGU-GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 127376 0.67 0.879668
Target:  5'- gCGgcaGGUGCGUGAUgaagggCgGCCACaGGCGg -3'
miRNA:   3'- -GCaggUCACGCACUA------GgCGGUG-CCGC- -5'
14252 5' -58.8 NC_003521.1 + 119308 0.68 0.803759
Target:  5'- cCGUCCAGgugagGCGgauggUGAUgCGCaCGCGGuCGg -3'
miRNA:   3'- -GCAGGUCa----CGC-----ACUAgGCG-GUGCC-GC- -5'
14252 5' -58.8 NC_003521.1 + 179117 0.69 0.786707
Target:  5'- gCGUa-GGUGCaUGAccUCCGCCGCGGUu -3'
miRNA:   3'- -GCAggUCACGcACU--AGGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 166231 0.69 0.786707
Target:  5'- gGUagaAGaGCGUGAUgCCGCC-CGGCGa -3'
miRNA:   3'- gCAgg-UCaCGCACUA-GGCGGuGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 103425 0.79 0.273556
Target:  5'- gCGUCgAcGUGCGUGAgcUCCGCCaggucGCGGCGg -3'
miRNA:   3'- -GCAGgU-CACGCACU--AGGCGG-----UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 102005 0.73 0.513933
Target:  5'- uGUCCAGgcacaggGCGUGGUugagcaCCuggGCCACGGCGc -3'
miRNA:   3'- gCAGGUCa------CGCACUA------GG---CGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 124434 0.72 0.589377
Target:  5'- uCGUCCGGcgaGaCGUGGUUgGgCCGCGGCGg -3'
miRNA:   3'- -GCAGGUCa--C-GCACUAGgC-GGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 92496 0.72 0.608622
Target:  5'- -cUCCGG-GCGUGGUCCGCCACc--- -3'
miRNA:   3'- gcAGGUCaCGCACUAGGCGGUGccgc -5'
14252 5' -58.8 NC_003521.1 + 116767 0.71 0.656896
Target:  5'- uGUgCA--GCGUGGgccgCCGCCGCGGCa -3'
miRNA:   3'- gCAgGUcaCGCACUa---GGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 142324 0.71 0.656896
Target:  5'- uCGUCgCaacugGGUGCGcGAggccgCCGCCACGGCc -3'
miRNA:   3'- -GCAG-G-----UCACGCaCUa----GGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 115391 0.7 0.72352
Target:  5'- uGUgCAGgGCGcGGgcggCCGCCACGGCc -3'
miRNA:   3'- gCAgGUCaCGCaCUa---GGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 140473 0.69 0.751175
Target:  5'- cCGUCC---GCGUGGcUUCGCCGCGGUu -3'
miRNA:   3'- -GCAGGucaCGCACU-AGGCGGUGCCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.