miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14252 5' -58.8 NC_003521.1 + 4332 0.67 0.879668
Target:  5'- cCGUCCA-UGCcUGGcgccaCCGCCGcCGGCGg -3'
miRNA:   3'- -GCAGGUcACGcACUa----GGCGGU-GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 6083 0.79 0.267513
Target:  5'- aCGgCCGGUGCGgcgGcguUCCGCCACGGCu -3'
miRNA:   3'- -GCaGGUCACGCa--Cu--AGGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 7969 0.67 0.858728
Target:  5'- uGUCgCGGc-CGggagGGUCCGCgGCGGCGg -3'
miRNA:   3'- gCAG-GUCacGCa---CUAGGCGgUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 16866 0.66 0.898844
Target:  5'- aCGUCUAcgacGUGCGU--UCC-CCGCGGCc -3'
miRNA:   3'- -GCAGGU----CACGCAcuAGGcGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 17353 0.66 0.898843
Target:  5'- --cCCGG-GcCGUGAcgCCGgCGCGGCGg -3'
miRNA:   3'- gcaGGUCaC-GCACUa-GGCgGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 17483 0.67 0.858728
Target:  5'- aCGgcaCCGGUaGCG-GcgCCGCCggucACGGCGg -3'
miRNA:   3'- -GCa--GGUCA-CGCaCuaGGCGG----UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 23236 0.7 0.727248
Target:  5'- gGUCCGGgGCGgacccgggguccugaUGAucUCCGCCaugACGGCGa -3'
miRNA:   3'- gCAGGUCaCGC---------------ACU--AGGCGG---UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 27969 0.66 0.910601
Target:  5'- aCG-CCAGgcgGCGcucaCgGCCACGGCGg -3'
miRNA:   3'- -GCaGGUCa--CGCacuaGgCGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 29102 1.09 0.002899
Target:  5'- gCGUCCAGUGCGUGAUCCGCCACGGCGg -3'
miRNA:   3'- -GCAGGUCACGCACUAGGCGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 43345 0.71 0.676129
Target:  5'- cCGUCCGGcccgccgcGCGUGAacaUCCGCCAgagcaugcgcUGGCGc -3'
miRNA:   3'- -GCAGGUCa-------CGCACU---AGGCGGU----------GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 47625 0.73 0.56073
Target:  5'- uCGUCCAG-GCGg---CCGUgACGGCGg -3'
miRNA:   3'- -GCAGGUCaCGCacuaGGCGgUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 52787 0.66 0.910033
Target:  5'- uGUCCAGgcgGCGgugcggcuccaccUGGaCCGCCuucACGGUGa -3'
miRNA:   3'- gCAGGUCa--CGC-------------ACUaGGCGG---UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 53505 0.67 0.851376
Target:  5'- aG-CCGGUGCGcUGuuGUCCGaCGCGGCc -3'
miRNA:   3'- gCaGGUCACGC-AC--UAGGCgGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 56778 0.66 0.892654
Target:  5'- cCGUCCAgcugcuGUGCGcGAgggCuCGCgACGGCa -3'
miRNA:   3'- -GCAGGU------CACGCaCUa--G-GCGgUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 58384 0.66 0.886261
Target:  5'- --cCCcGUGCacaggggGAUCUGCCGCGGCc -3'
miRNA:   3'- gcaGGuCACGca-----CUAGGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 64829 0.67 0.851376
Target:  5'- cCGUCCGGgGCuaacagggGAUCU-CCACGGCGa -3'
miRNA:   3'- -GCAGGUCaCGca------CUAGGcGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 68014 0.75 0.442728
Target:  5'- --cCCAGcUGCGUGAgccucaCCGCCACgGGCGg -3'
miRNA:   3'- gcaGGUC-ACGCACUa-----GGCGGUG-CCGC- -5'
14252 5' -58.8 NC_003521.1 + 70744 0.66 0.892654
Target:  5'- uCGUCCAGcUGCag---CgCGCCGCGGCc -3'
miRNA:   3'- -GCAGGUC-ACGcacuaG-GCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 76554 0.66 0.898843
Target:  5'- uGUCCAGgaGCGgcGGUCCGCgCcucCGGCa -3'
miRNA:   3'- gCAGGUCa-CGCa-CUAGGCG-Gu--GCCGc -5'
14252 5' -58.8 NC_003521.1 + 88441 0.67 0.858728
Target:  5'- -cUCCAGggaGaCGUcGUCCGCCuCGGCGu -3'
miRNA:   3'- gcAGGUCa--C-GCAcUAGGCGGuGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.