miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14252 5' -58.8 NC_003521.1 + 29102 1.09 0.002899
Target:  5'- gCGUCCAGUGCGUGAUCCGCCACGGCGg -3'
miRNA:   3'- -GCAGGUCACGCACUAGGCGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 163226 0.79 0.250031
Target:  5'- gCGcCCGGUGaCGUGGguUCgGCCACGGCGg -3'
miRNA:   3'- -GCaGGUCAC-GCACU--AGgCGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 6083 0.79 0.267513
Target:  5'- aCGgCCGGUGCGgcgGcguUCCGCCACGGCu -3'
miRNA:   3'- -GCaGGUCACGCa--Cu--AGGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 103425 0.79 0.273556
Target:  5'- gCGUCgAcGUGCGUGAgcUCCGCCaggucGCGGCGg -3'
miRNA:   3'- -GCAGgU-CACGCACU--AGGCGG-----UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 170058 0.76 0.39314
Target:  5'- -uUCCAcGUGCagcugGUGAUCgGCCGCGGCGc -3'
miRNA:   3'- gcAGGU-CACG-----CACUAGgCGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 112364 0.76 0.409268
Target:  5'- uGcCCAugGaCGUGAUCCGCCugGGCGa -3'
miRNA:   3'- gCaGGUcaC-GCACUAGGCGGugCCGC- -5'
14252 5' -58.8 NC_003521.1 + 68014 0.75 0.442728
Target:  5'- --cCCAGcUGCGUGAgccucaCCGCCACgGGCGg -3'
miRNA:   3'- gcaGGUC-ACGCACUa-----GGCGGUG-CCGC- -5'
14252 5' -58.8 NC_003521.1 + 102005 0.73 0.513933
Target:  5'- uGUCCAGgcacaggGCGUGGUugagcaCCuggGCCACGGCGc -3'
miRNA:   3'- gCAGGUCa------CGCACUA------GG---CGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 47625 0.73 0.56073
Target:  5'- uCGUCCAG-GCGg---CCGUgACGGCGg -3'
miRNA:   3'- -GCAGGUCaCGCacuaGGCGgUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 172304 0.72 0.579793
Target:  5'- cCGUCCGGUGUcgGUGGcgccaggCCgGUCGCGGCGg -3'
miRNA:   3'- -GCAGGUCACG--CACUa------GG-CGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 124434 0.72 0.589377
Target:  5'- uCGUCCGGcgaGaCGUGGUUgGgCCGCGGCGg -3'
miRNA:   3'- -GCAGGUCa--C-GCACUAGgC-GGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 207600 0.72 0.608622
Target:  5'- aCG-CCGGcUGCaaGAUCCGUCugGGCGg -3'
miRNA:   3'- -GCaGGUC-ACGcaCUAGGCGGugCCGC- -5'
14252 5' -58.8 NC_003521.1 + 92496 0.72 0.608622
Target:  5'- -cUCCGG-GCGUGGUCCGCCACc--- -3'
miRNA:   3'- gcAGGUCaCGCACUAGGCGGUGccgc -5'
14252 5' -58.8 NC_003521.1 + 116767 0.71 0.656896
Target:  5'- uGUgCA--GCGUGGgccgCCGCCGCGGCa -3'
miRNA:   3'- gCAgGUcaCGCACUa---GGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 142324 0.71 0.656896
Target:  5'- uCGUCgCaacugGGUGCGcGAggccgCCGCCACGGCc -3'
miRNA:   3'- -GCAG-G-----UCACGCaCUa----GGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 223737 0.71 0.665562
Target:  5'- gGUCCGGUGgcgggaaCGUGGgucgCCGCCAgCGGUa -3'
miRNA:   3'- gCAGGUCAC-------GCACUa---GGCGGU-GCCGc -5'
14252 5' -58.8 NC_003521.1 + 43345 0.71 0.676129
Target:  5'- cCGUCCGGcccgccgcGCGUGAacaUCCGCCAgagcaugcgcUGGCGc -3'
miRNA:   3'- -GCAGGUCa-------CGCACU---AGGCGGU----------GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 115391 0.7 0.72352
Target:  5'- uGUgCAGgGCGcGGgcggCCGCCACGGCc -3'
miRNA:   3'- gCAgGUCaCGCaCUa---GGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 23236 0.7 0.727248
Target:  5'- gGUCCGGgGCGgacccgggguccugaUGAucUCCGCCaugACGGCGa -3'
miRNA:   3'- gCAGGUCaCGC---------------ACU--AGGCGG---UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 140473 0.69 0.751175
Target:  5'- cCGUCC---GCGUGGcUUCGCCGCGGUu -3'
miRNA:   3'- -GCAGGucaCGCACU-AGGCGGUGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.