miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14266 5' -60.5 NC_003521.1 + 186626 0.73 0.516522
Target:  5'- gCGGCGGCGGuggUGGCGGcaagUCGaCGUCGCGc -3'
miRNA:   3'- -GCUGCCGCU---GCUGCCa---GGC-GCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 55195 0.73 0.516522
Target:  5'- aCGAcCGGCGAUGGCaGUCCGC--CGCGc -3'
miRNA:   3'- -GCU-GCCGCUGCUGcCAGGCGcaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 59613 0.73 0.516522
Target:  5'- uGGCGGCGGCcccGGCGGcgaCCGCGgcUCGCa -3'
miRNA:   3'- gCUGCCGCUG---CUGCCa--GGCGC--AGCGc -5'
14266 5' -60.5 NC_003521.1 + 34213 0.73 0.516522
Target:  5'- gGGCGGCGuaGACGGcgcCCGUGUCGCc -3'
miRNA:   3'- gCUGCCGCugCUGCCa--GGCGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 74788 0.73 0.525527
Target:  5'- aCGACGGCGGCaGCGGUagCgGCGagaCGCGg -3'
miRNA:   3'- -GCUGCCGCUGcUGCCA--GgCGCa--GCGC- -5'
14266 5' -60.5 NC_003521.1 + 118003 0.72 0.543709
Target:  5'- aCGACGGUaGCGGCGG--CGUGUCGCu -3'
miRNA:   3'- -GCUGCCGcUGCUGCCagGCGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 111079 0.72 0.543709
Target:  5'- gGGCGGCGAaGACGGcgcggacgcgcUCgGCGUCGaCGg -3'
miRNA:   3'- gCUGCCGCUgCUGCC-----------AGgCGCAGC-GC- -5'
14266 5' -60.5 NC_003521.1 + 91502 0.72 0.551958
Target:  5'- uCGAagaGGCGugagaccACGGCGG-CCGCGUCGUc -3'
miRNA:   3'- -GCUg--CCGC-------UGCUGCCaGGCGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 74695 0.72 0.552877
Target:  5'- -aGCaGCGACGGCGGcgCCGCGgcaGCGg -3'
miRNA:   3'- gcUGcCGCUGCUGCCa-GGCGCag-CGC- -5'
14266 5' -60.5 NC_003521.1 + 74903 0.72 0.552877
Target:  5'- aGACGGUGGCGGCGGUggagucggCC-CGgcagCGCGg -3'
miRNA:   3'- gCUGCCGCUGCUGCCA--------GGcGCa---GCGC- -5'
14266 5' -60.5 NC_003521.1 + 140566 0.72 0.562092
Target:  5'- gCGGCGGCGGCGACaGcUCGuCGUCGgGc -3'
miRNA:   3'- -GCUGCCGCUGCUGcCaGGC-GCAGCgC- -5'
14266 5' -60.5 NC_003521.1 + 169452 0.72 0.565789
Target:  5'- gCGuCGGCGGCGGCGGguucgucgccaggCGCGUCGUc -3'
miRNA:   3'- -GCuGCCGCUGCUGCCag-----------GCGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 86655 0.72 0.571347
Target:  5'- uGGCGGcCGACGACaGGUUgaggaucagCGCGUCGUc -3'
miRNA:   3'- gCUGCC-GCUGCUG-CCAG---------GCGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 36984 0.72 0.571347
Target:  5'- uCGGCGGCGacauccGCGACGaGg--GCGUCGCGg -3'
miRNA:   3'- -GCUGCCGC------UGCUGC-CaggCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 141359 0.72 0.580638
Target:  5'- aCGGguGCGGCGGCGGUCgGUGaCGCGg -3'
miRNA:   3'- -GCUgcCGCUGCUGCCAGgCGCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 163305 0.71 0.589961
Target:  5'- gCGACGGCGuguCcACGGUCaGCGgCGCGa -3'
miRNA:   3'- -GCUGCCGCu--GcUGCCAGgCGCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 223359 0.71 0.589961
Target:  5'- uCGGCGGCGGCcuUGGUCagcaGCGacaUCGCGg -3'
miRNA:   3'- -GCUGCCGCUGcuGCCAGg---CGC---AGCGC- -5'
14266 5' -60.5 NC_003521.1 + 180935 0.71 0.589961
Target:  5'- uCGAUGGUGGCG-CGGUgCCGUaGUcCGCGg -3'
miRNA:   3'- -GCUGCCGCUGCuGCCA-GGCG-CA-GCGC- -5'
14266 5' -60.5 NC_003521.1 + 196725 0.71 0.589961
Target:  5'- cCGGCGGCGACGGUGGUggCgGCGgCGCc -3'
miRNA:   3'- -GCUGCCGCUGCUGCCA--GgCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 172118 0.71 0.589961
Target:  5'- cCGACGGCG-CcACGGUCaugaguuCGUCGCGg -3'
miRNA:   3'- -GCUGCCGCuGcUGCCAGgc-----GCAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.