Results 21 - 40 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14266 | 5' | -60.5 | NC_003521.1 | + | 234842 | 0.76 | 0.353417 |
Target: 5'- gGACGGCGauaGCGugGGcaUCgGCGUCGUGu -3' miRNA: 3'- gCUGCCGC---UGCugCC--AGgCGCAGCGC- -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 28152 | 0.75 | 0.390704 |
Target: 5'- gCGACGGCGGCGACcauGcCCGCGaCGCc -3' miRNA: 3'- -GCUGCCGCUGCUGc--CaGGCGCaGCGc -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 113855 | 0.75 | 0.397684 |
Target: 5'- gCGGcCGGCGACGACGGcgcggguUCCGCGgcggcacaGCGa -3' miRNA: 3'- -GCU-GCCGCUGCUGCC-------AGGCGCag------CGC- -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 123069 | 0.75 | 0.398464 |
Target: 5'- gGACGGCGGCGGCGGaggagCUcCGUCGUa -3' miRNA: 3'- gCUGCCGCUGCUGCCa----GGcGCAGCGc -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 6406 | 0.75 | 0.406322 |
Target: 5'- -cGCGGCGGCGACGGgucuugCCGCcUCGgGa -3' miRNA: 3'- gcUGCCGCUGCUGCCa-----GGCGcAGCgC- -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 131047 | 0.75 | 0.414276 |
Target: 5'- gGGCGGCGGCGGCGGgccucuggaCGCgGUgGCGg -3' miRNA: 3'- gCUGCCGCUGCUGCCag-------GCG-CAgCGC- -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 142683 | 0.75 | 0.422326 |
Target: 5'- gCGACGGCGGCagcagcuaccACGGacUCCGCGcCGCGa -3' miRNA: 3'- -GCUGCCGCUGc---------UGCC--AGGCGCaGCGC- -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 123177 | 0.74 | 0.430468 |
Target: 5'- uGGCGGCGGCGGCGGgggaCCGUagGcCGCa -3' miRNA: 3'- gCUGCCGCUGCUGCCa---GGCG--CaGCGc -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 113780 | 0.74 | 0.447026 |
Target: 5'- aCGACGGCGacggccagcGCGACGGgcaCCGCGgcgGCGu -3' miRNA: 3'- -GCUGCCGC---------UGCUGCCa--GGCGCag-CGC- -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 123584 | 0.74 | 0.455436 |
Target: 5'- uGGCGGCGGCGcCGGgagCCGC--CGCGg -3' miRNA: 3'- gCUGCCGCUGCuGCCa--GGCGcaGCGC- -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 98471 | 0.74 | 0.463931 |
Target: 5'- gCGGCGGCGgccGCGGCGG-CCGUGgcggcggccUCGCGc -3' miRNA: 3'- -GCUGCCGC---UGCUGCCaGGCGC---------AGCGC- -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 119792 | 0.74 | 0.472509 |
Target: 5'- -aGCGGCGACGA-GGUCgGCGcCGCc -3' miRNA: 3'- gcUGCCGCUGCUgCCAGgCGCaGCGc -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 129176 | 0.73 | 0.489898 |
Target: 5'- aGACGGCGuGCGGCGGUuuGgGuuUCGCc -3' miRNA: 3'- gCUGCCGC-UGCUGCCAggCgC--AGCGc -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 191086 | 0.73 | 0.489898 |
Target: 5'- uGGUGGCGGCGGCGGgCUGCGUCuCGu -3' miRNA: 3'- gCUGCCGCUGCUGCCaGGCGCAGcGC- -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 186817 | 0.73 | 0.49782 |
Target: 5'- gCGugGGCGACcagaucuGACGGUCCuGCGaaUgGCGg -3' miRNA: 3'- -GCugCCGCUG-------CUGCCAGG-CGC--AgCGC- -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 197856 | 0.73 | 0.498704 |
Target: 5'- gGugGGCGcCGGCGGgUCGCGcUCGCu -3' miRNA: 3'- gCugCCGCuGCUGCCaGGCGC-AGCGc -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 215630 | 0.73 | 0.498704 |
Target: 5'- uGuCGGUGAgGACGGggcUCCGCaugGUCGCGg -3' miRNA: 3'- gCuGCCGCUgCUGCC---AGGCG---CAGCGC- -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 92025 | 0.73 | 0.498704 |
Target: 5'- gCGGCGGCGGCgGugGGUCCGgGggucccCGgGg -3' miRNA: 3'- -GCUGCCGCUG-CugCCAGGCgCa-----GCgC- -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 129562 | 0.73 | 0.50758 |
Target: 5'- aCGGCGGgccCGACGAUGGcugcuccgCCGCGcCGCGc -3' miRNA: 3'- -GCUGCC---GCUGCUGCCa-------GGCGCaGCGC- -5' |
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14266 | 5' | -60.5 | NC_003521.1 | + | 55195 | 0.73 | 0.516522 |
Target: 5'- aCGAcCGGCGAUGGCaGUCCGC--CGCGc -3' miRNA: 3'- -GCU-GCCGCUGCUGcCAGGCGcaGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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