miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14266 5' -60.5 NC_003521.1 + 20169 1.09 0.002633
Target:  5'- aCGACGGCGACGACGGUCCGCGUCGCGa -3'
miRNA:   3'- -GCUGCCGCUGCUGCCAGGCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 124094 0.83 0.13215
Target:  5'- cCGACGGCGugGGCGGgaagcagCGCGUCGCu -3'
miRNA:   3'- -GCUGCCGCugCUGCCag-----GCGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 218715 0.82 0.159592
Target:  5'- aCGGCGGCGGCGGCGGgcgagaagCgGCGUCGgGa -3'
miRNA:   3'- -GCUGCCGCUGCUGCCa-------GgCGCAGCgC- -5'
14266 5' -60.5 NC_003521.1 + 72541 0.81 0.192073
Target:  5'- aGGCGGCGGCGACGGUgucgUCGUcUCGCGa -3'
miRNA:   3'- gCUGCCGCUGCUGCCA----GGCGcAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 209568 0.8 0.205679
Target:  5'- gCGACGGUGGCGGgGGUCCGgGggCGCa -3'
miRNA:   3'- -GCUGCCGCUGCUgCCAGGCgCa-GCGc -5'
14266 5' -60.5 NC_003521.1 + 31094 0.79 0.230208
Target:  5'- aCGACGGCGGCGGcCGGUacaCGCGgCGCa -3'
miRNA:   3'- -GCUGCCGCUGCU-GCCAg--GCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 98635 0.78 0.274538
Target:  5'- -aGCGGCGGCGGCGGUagCgGCGUCGaCGa -3'
miRNA:   3'- gcUGCCGCUGCUGCCA--GgCGCAGC-GC- -5'
14266 5' -60.5 NC_003521.1 + 212072 0.78 0.286639
Target:  5'- gGGCGGUGGCG-CGGcCCGCG-CGCGu -3'
miRNA:   3'- gCUGCCGCUGCuGCCaGGCGCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 104165 0.77 0.325447
Target:  5'- gCGGCGGCGGCG-CGGgucgcaCgGCGUUGCGg -3'
miRNA:   3'- -GCUGCCGCUGCuGCCa-----GgCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 150404 0.77 0.332283
Target:  5'- uCGGCGGCGACGAgccCGGacCCGUcuGUCGCGu -3'
miRNA:   3'- -GCUGCCGCUGCU---GCCa-GGCG--CAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 166280 0.77 0.332283
Target:  5'- gCGcACGGCG-CGGCuGGUCCGCGUgGCc -3'
miRNA:   3'- -GC-UGCCGCuGCUG-CCAGGCGCAgCGc -5'
14266 5' -60.5 NC_003521.1 + 53167 0.77 0.332283
Target:  5'- gGACGGCGGCGAggaGGUCgGCGaCGCc -3'
miRNA:   3'- gCUGCCGCUGCUg--CCAGgCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 155260 0.77 0.332283
Target:  5'- gGGCGGCGGCGGCGGcgccucaggCC-CGUCGCu -3'
miRNA:   3'- gCUGCCGCUGCUGCCa--------GGcGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 169308 0.77 0.332283
Target:  5'- aCGuCGGcCGGCGuCGGUCgcaGCGUCGCGg -3'
miRNA:   3'- -GCuGCC-GCUGCuGCCAGg--CGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 195197 0.77 0.332283
Target:  5'- cCGGCGGCGGUGGCcGUCUGCGUCgGCGc -3'
miRNA:   3'- -GCUGCCGCUGCUGcCAGGCGCAG-CGC- -5'
14266 5' -60.5 NC_003521.1 + 133378 0.77 0.332283
Target:  5'- cCGcCGGCacagcGCGGCGGUCCGCGcuuUCGCGu -3'
miRNA:   3'- -GCuGCCGc----UGCUGCCAGGCGC---AGCGC- -5'
14266 5' -60.5 NC_003521.1 + 142748 0.76 0.339223
Target:  5'- aCGAaGGCGACGACGGggugaCCaGCGUcCGCGg -3'
miRNA:   3'- -GCUgCCGCUGCUGCCa----GG-CGCA-GCGC- -5'
14266 5' -60.5 NC_003521.1 + 234842 0.76 0.353417
Target:  5'- gGACGGCGauaGCGugGGcaUCgGCGUCGUGu -3'
miRNA:   3'- gCUGCCGC---UGCugCC--AGgCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 76359 0.76 0.353417
Target:  5'- gCGGCGGCGGCagcggcgaccguGACGG-CCGCGgcCGCGg -3'
miRNA:   3'- -GCUGCCGCUG------------CUGCCaGGCGCa-GCGC- -5'
14266 5' -60.5 NC_003521.1 + 74570 0.76 0.353417
Target:  5'- uGAgGGCGGCGACGGagCgGCGgCGCGg -3'
miRNA:   3'- gCUgCCGCUGCUGCCa-GgCGCaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.