miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14266 5' -60.5 NC_003521.1 + 59613 0.73 0.516522
Target:  5'- uGGCGGCGGCcccGGCGGcgaCCGCGgcUCGCa -3'
miRNA:   3'- gCUGCCGCUG---CUGCCa--GGCGC--AGCGc -5'
14266 5' -60.5 NC_003521.1 + 131047 0.75 0.414276
Target:  5'- gGGCGGCGGCGGCGGgccucuggaCGCgGUgGCGg -3'
miRNA:   3'- gCUGCCGCUGCUGCCag-------GCG-CAgCGC- -5'
14266 5' -60.5 NC_003521.1 + 142683 0.75 0.422326
Target:  5'- gCGACGGCGGCagcagcuaccACGGacUCCGCGcCGCGa -3'
miRNA:   3'- -GCUGCCGCUGc---------UGCC--AGGCGCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 191086 0.73 0.489898
Target:  5'- uGGUGGCGGCGGCGGgCUGCGUCuCGu -3'
miRNA:   3'- gCUGCCGCUGCUGCCaGGCGCAGcGC- -5'
14266 5' -60.5 NC_003521.1 + 186817 0.73 0.49782
Target:  5'- gCGugGGCGACcagaucuGACGGUCCuGCGaaUgGCGg -3'
miRNA:   3'- -GCugCCGCUG-------CUGCCAGG-CGC--AgCGC- -5'
14266 5' -60.5 NC_003521.1 + 92025 0.73 0.498704
Target:  5'- gCGGCGGCGGCgGugGGUCCGgGggucccCGgGg -3'
miRNA:   3'- -GCUGCCGCUG-CugCCAGGCgCa-----GCgC- -5'
14266 5' -60.5 NC_003521.1 + 215630 0.73 0.498704
Target:  5'- uGuCGGUGAgGACGGggcUCCGCaugGUCGCGg -3'
miRNA:   3'- gCuGCCGCUgCUGCC---AGGCG---CAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 129562 0.73 0.50758
Target:  5'- aCGGCGGgccCGACGAUGGcugcuccgCCGCGcCGCGc -3'
miRNA:   3'- -GCUGCC---GCUGCUGCCa-------GGCGCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 34213 0.73 0.516522
Target:  5'- gGGCGGCGuaGACGGcgcCCGUGUCGCc -3'
miRNA:   3'- gCUGCCGCugCUGCCa--GGCGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 6406 0.75 0.406322
Target:  5'- -cGCGGCGGCGACGGgucuugCCGCcUCGgGa -3'
miRNA:   3'- gcUGCCGCUGCUGCCa-----GGCGcAGCgC- -5'
14266 5' -60.5 NC_003521.1 + 28152 0.75 0.390704
Target:  5'- gCGACGGCGGCGACcauGcCCGCGaCGCc -3'
miRNA:   3'- -GCUGCCGCUGCUGc--CaGGCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 74570 0.76 0.353417
Target:  5'- uGAgGGCGGCGACGGagCgGCGgCGCGg -3'
miRNA:   3'- gCUgCCGCUGCUGCCa-GgCGCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 218715 0.82 0.159592
Target:  5'- aCGGCGGCGGCGGCGGgcgagaagCgGCGUCGgGa -3'
miRNA:   3'- -GCUGCCGCUGCUGCCa-------GgCGCAGCgC- -5'
14266 5' -60.5 NC_003521.1 + 72541 0.81 0.192073
Target:  5'- aGGCGGCGGCGACGGUgucgUCGUcUCGCGa -3'
miRNA:   3'- gCUGCCGCUGCUGCCA----GGCGcAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 209568 0.8 0.205679
Target:  5'- gCGACGGUGGCGGgGGUCCGgGggCGCa -3'
miRNA:   3'- -GCUGCCGCUGCUgCCAGGCgCa-GCGc -5'
14266 5' -60.5 NC_003521.1 + 31094 0.79 0.230208
Target:  5'- aCGACGGCGGCGGcCGGUacaCGCGgCGCa -3'
miRNA:   3'- -GCUGCCGCUGCU-GCCAg--GCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 166280 0.77 0.332283
Target:  5'- gCGcACGGCG-CGGCuGGUCCGCGUgGCc -3'
miRNA:   3'- -GC-UGCCGCuGCUG-CCAGGCGCAgCGc -5'
14266 5' -60.5 NC_003521.1 + 133378 0.77 0.332283
Target:  5'- cCGcCGGCacagcGCGGCGGUCCGCGcuuUCGCGu -3'
miRNA:   3'- -GCuGCCGc----UGCUGCCAGGCGC---AGCGC- -5'
14266 5' -60.5 NC_003521.1 + 150404 0.77 0.332283
Target:  5'- uCGGCGGCGACGAgccCGGacCCGUcuGUCGCGu -3'
miRNA:   3'- -GCUGCCGCUGCU---GCCa-GGCG--CAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 142748 0.76 0.339223
Target:  5'- aCGAaGGCGACGACGGggugaCCaGCGUcCGCGg -3'
miRNA:   3'- -GCUgCCGCUGCUGCCa----GG-CGCA-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.