miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14266 5' -60.5 NC_003521.1 + 20169 1.09 0.002633
Target:  5'- aCGACGGCGACGACGGUCCGCGUCGCGa -3'
miRNA:   3'- -GCUGCCGCUGCUGCCAGGCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 119792 0.74 0.472509
Target:  5'- -aGCGGCGACGA-GGUCgGCGcCGCc -3'
miRNA:   3'- gcUGCCGCUGCUgCCAGgCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 197856 0.73 0.498704
Target:  5'- gGugGGCGcCGGCGGgUCGCGcUCGCu -3'
miRNA:   3'- gCugCCGCuGCUGCCaGGCGC-AGCGc -5'
14266 5' -60.5 NC_003521.1 + 235133 0.66 0.886899
Target:  5'- uGACGGCGcccguuccccGCgGACGGgcgcCCGUGUCuCGa -3'
miRNA:   3'- gCUGCCGC----------UG-CUGCCa---GGCGCAGcGC- -5'
14266 5' -60.5 NC_003521.1 + 53167 0.77 0.332283
Target:  5'- gGACGGCGGCGAggaGGUCgGCGaCGCc -3'
miRNA:   3'- gCUGCCGCUGCUg--CCAGgCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 155260 0.77 0.332283
Target:  5'- gGGCGGCGGCGGCGGcgccucaggCC-CGUCGCu -3'
miRNA:   3'- gCUGCCGCUGCUGCCa--------GGcGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 195197 0.77 0.332283
Target:  5'- cCGGCGGCGGUGGCcGUCUGCGUCgGCGc -3'
miRNA:   3'- -GCUGCCGCUGCUGcCAGGCGCAG-CGC- -5'
14266 5' -60.5 NC_003521.1 + 234842 0.76 0.353417
Target:  5'- gGACGGCGauaGCGugGGcaUCgGCGUCGUGu -3'
miRNA:   3'- gCUGCCGC---UGCugCC--AGgCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 113855 0.75 0.397684
Target:  5'- gCGGcCGGCGACGACGGcgcggguUCCGCGgcggcacaGCGa -3'
miRNA:   3'- -GCU-GCCGCUGCUGCC-------AGGCGCag------CGC- -5'
14266 5' -60.5 NC_003521.1 + 98471 0.74 0.463931
Target:  5'- gCGGCGGCGgccGCGGCGG-CCGUGgcggcggccUCGCGc -3'
miRNA:   3'- -GCUGCCGC---UGCUGCCaGGCGC---------AGCGC- -5'
14266 5' -60.5 NC_003521.1 + 123177 0.74 0.430468
Target:  5'- uGGCGGCGGCGGCGGgggaCCGUagGcCGCa -3'
miRNA:   3'- gCUGCCGCUGCUGCCa---GGCG--CaGCGc -5'
14266 5' -60.5 NC_003521.1 + 122612 0.76 0.353417
Target:  5'- --cCGGCGACGGCGGcggCCGCG-CGCu -3'
miRNA:   3'- gcuGCCGCUGCUGCCa--GGCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 98635 0.78 0.274538
Target:  5'- -aGCGGCGGCGGCGGUagCgGCGUCGaCGa -3'
miRNA:   3'- gcUGCCGCUGCUGCCA--GgCGCAGC-GC- -5'
14266 5' -60.5 NC_003521.1 + 113780 0.74 0.447026
Target:  5'- aCGACGGCGacggccagcGCGACGGgcaCCGCGgcgGCGu -3'
miRNA:   3'- -GCUGCCGC---------UGCUGCCa--GGCGCag-CGC- -5'
14266 5' -60.5 NC_003521.1 + 212072 0.78 0.286639
Target:  5'- gGGCGGUGGCG-CGGcCCGCG-CGCGu -3'
miRNA:   3'- gCUGCCGCUGCuGCCaGGCGCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 76359 0.76 0.353417
Target:  5'- gCGGCGGCGGCagcggcgaccguGACGG-CCGCGgcCGCGg -3'
miRNA:   3'- -GCUGCCGCUG------------CUGCCaGGCGCa-GCGC- -5'
14266 5' -60.5 NC_003521.1 + 123584 0.74 0.455436
Target:  5'- uGGCGGCGGCGcCGGgagCCGC--CGCGg -3'
miRNA:   3'- gCUGCCGCUGCuGCCa--GGCGcaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 129176 0.73 0.489898
Target:  5'- aGACGGCGuGCGGCGGUuuGgGuuUCGCc -3'
miRNA:   3'- gCUGCCGC-UGCUGCCAggCgC--AGCGc -5'
14266 5' -60.5 NC_003521.1 + 104165 0.77 0.325447
Target:  5'- gCGGCGGCGGCG-CGGgucgcaCgGCGUUGCGg -3'
miRNA:   3'- -GCUGCCGCUGCuGCCa-----GgCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 169308 0.77 0.332283
Target:  5'- aCGuCGGcCGGCGuCGGUCgcaGCGUCGCGg -3'
miRNA:   3'- -GCuGCC-GCUGCuGCCAGg--CGCAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.