miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14266 5' -60.5 NC_003521.1 + 140236 0.66 0.860237
Target:  5'- uGAUGGCGGCuccc-UCCGCGUCGUc -3'
miRNA:   3'- gCUGCCGCUGcugccAGGCGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 30844 0.66 0.860237
Target:  5'- gGGCGccuuGCGACGgcaGCGGUUgGCGUUGUu -3'
miRNA:   3'- gCUGC----CGCUGC---UGCCAGgCGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 77726 0.66 0.853126
Target:  5'- gCGACGGCGGCcucgGugGG-CgGCGUCu-- -3'
miRNA:   3'- -GCUGCCGCUG----CugCCaGgCGCAGcgc -5'
14266 5' -60.5 NC_003521.1 + 163769 0.66 0.873932
Target:  5'- aCGGCGGCGGCaacaACGGUa-GCGgCGCc -3'
miRNA:   3'- -GCUGCCGCUGc---UGCCAggCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 69491 0.66 0.873932
Target:  5'- aGACGGUGGucguaGACGGcgcaggCCGCGUUGa- -3'
miRNA:   3'- gCUGCCGCUg----CUGCCa-----GGCGCAGCgc -5'
14266 5' -60.5 NC_003521.1 + 235133 0.66 0.886899
Target:  5'- uGACGGCGcccguuccccGCgGACGGgcgcCCGUGUCuCGa -3'
miRNA:   3'- gCUGCCGC----------UG-CUGCCa---GGCGCAGcGC- -5'
14266 5' -60.5 NC_003521.1 + 120961 0.66 0.873932
Target:  5'- aGGgGGCGG-GGCGGUuuGCGgucCGCc -3'
miRNA:   3'- gCUgCCGCUgCUGCCAggCGCa--GCGc -5'
14266 5' -60.5 NC_003521.1 + 119017 0.66 0.869899
Target:  5'- aGGCGGCGaacacggauucggauAgGGCGGgCgGCGUCGgGg -3'
miRNA:   3'- gCUGCCGC---------------UgCUGCCaGgCGCAGCgC- -5'
14266 5' -60.5 NC_003521.1 + 113367 0.66 0.867174
Target:  5'- cCGGgGGCGAggaggaggguuaCGGCGGacgCCGCGg-GCGg -3'
miRNA:   3'- -GCUgCCGCU------------GCUGCCa--GGCGCagCGC- -5'
14266 5' -60.5 NC_003521.1 + 124458 0.66 0.860237
Target:  5'- -cGCGGCGGC-ACGcGUucgccgCCGCGcUCGCGg -3'
miRNA:   3'- gcUGCCGCUGcUGC-CA------GGCGC-AGCGC- -5'
14266 5' -60.5 NC_003521.1 + 89319 0.66 0.873932
Target:  5'- cCGACGGCGGuaguucACcGUCCGCGaugUCGCa -3'
miRNA:   3'- -GCUGCCGCUgc----UGcCAGGCGC---AGCGc -5'
14266 5' -60.5 NC_003521.1 + 28859 0.66 0.867174
Target:  5'- gCGGCGGCG-CGgcACGGUCga-GUCGCc -3'
miRNA:   3'- -GCUGCCGCuGC--UGCCAGgcgCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 17773 0.66 0.873932
Target:  5'- cCGcCGGCGGCgGACGGUCagGUGaaggaaacaUCGCa -3'
miRNA:   3'- -GCuGCCGCUG-CUGCCAGg-CGC---------AGCGc -5'
14266 5' -60.5 NC_003521.1 + 75904 0.66 0.860237
Target:  5'- uGuCGGCGugGAUGGgcacgUUGUGcUCGCGc -3'
miRNA:   3'- gCuGCCGCugCUGCCa----GGCGC-AGCGC- -5'
14266 5' -60.5 NC_003521.1 + 40529 0.66 0.853126
Target:  5'- -aGCaGCGGCGACaGGUCgGgGUUGUGg -3'
miRNA:   3'- gcUGcCGCUGCUG-CCAGgCgCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 146892 0.66 0.853126
Target:  5'- aCGACGGCgGGCaGCGGUagucgCCGCuuGcCGCGa -3'
miRNA:   3'- -GCUGCCG-CUGcUGCCA-----GGCG--CaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 57659 0.66 0.880509
Target:  5'- gGACGGCGAagaaGACGacgacaccGUCUGgGUCuGCa -3'
miRNA:   3'- gCUGCCGCUg---CUGC--------CAGGCgCAG-CGc -5'
14266 5' -60.5 NC_003521.1 + 123277 0.66 0.852406
Target:  5'- gCG-UGaGCGACGACagcgucaGGUCCGCGg-GCGa -3'
miRNA:   3'- -GCuGC-CGCUGCUG-------CCAGGCGCagCGC- -5'
14266 5' -60.5 NC_003521.1 + 187900 0.66 0.873932
Target:  5'- gGGCGGCGGgGGCaGGUCgaucaGCaGcUCGCGa -3'
miRNA:   3'- gCUGCCGCUgCUG-CCAGg----CG-C-AGCGC- -5'
14266 5' -60.5 NC_003521.1 + 132634 0.66 0.873932
Target:  5'- uCGGCGGCGGCGccaccgGCGGuUCUGCuuccUCGUc -3'
miRNA:   3'- -GCUGCCGCUGC------UGCC-AGGCGc---AGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.