miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14266 5' -60.5 NC_003521.1 + 72 0.71 0.627455
Target:  5'- gCGGCGGCGuGCGGCGGgccggCCG-GUCGg- -3'
miRNA:   3'- -GCUGCCGC-UGCUGCCa----GGCgCAGCgc -5'
14266 5' -60.5 NC_003521.1 + 4677 0.67 0.845848
Target:  5'- cCGcCGGCGACGucgcGCGGUCCccccCGUCcCGu -3'
miRNA:   3'- -GCuGCCGCUGC----UGCCAGGc---GCAGcGC- -5'
14266 5' -60.5 NC_003521.1 + 5530 0.69 0.72049
Target:  5'- gCGACGGUGACGGCaG-CCG-G-CGCGg -3'
miRNA:   3'- -GCUGCCGCUGCUGcCaGGCgCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 6080 0.67 0.845848
Target:  5'- gCGACGGCcgguGCGGCGGcguUCCGCcacggcuaucugGUUGUGa -3'
miRNA:   3'- -GCUGCCGc---UGCUGCC---AGGCG------------CAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 6216 0.68 0.798939
Target:  5'- -uGCGGCauGACGGCGGUCCgaauggagaccgGCGcuccCGCGg -3'
miRNA:   3'- gcUGCCG--CUGCUGCCAGG------------CGCa---GCGC- -5'
14266 5' -60.5 NC_003521.1 + 6406 0.75 0.406322
Target:  5'- -cGCGGCGGCGACGGgucuugCCGCcUCGgGa -3'
miRNA:   3'- gcUGCCGCUGCUGCCa-----GGCGcAGCgC- -5'
14266 5' -60.5 NC_003521.1 + 6523 0.71 0.59931
Target:  5'- --cCGGUGACGaggGCGGUCUGCGUCcCGc -3'
miRNA:   3'- gcuGCCGCUGC---UGCCAGGCGCAGcGC- -5'
14266 5' -60.5 NC_003521.1 + 7643 0.71 0.627455
Target:  5'- cCGACGGUaACGGCGG-CCGCcacggcggCGCGg -3'
miRNA:   3'- -GCUGCCGcUGCUGCCaGGCGca------GCGC- -5'
14266 5' -60.5 NC_003521.1 + 7972 0.67 0.830804
Target:  5'- -cGCGGCcGgGAgGGUCCGCGgcgGCGg -3'
miRNA:   3'- gcUGCCGcUgCUgCCAGGCGCag-CGC- -5'
14266 5' -60.5 NC_003521.1 + 8136 0.67 0.807113
Target:  5'- aGACGGCGAgGguaGGUCUGCa--GCGg -3'
miRNA:   3'- gCUGCCGCUgCug-CCAGGCGcagCGC- -5'
14266 5' -60.5 NC_003521.1 + 9169 0.66 0.873932
Target:  5'- aCGGCGaGCaagacucgcauGACGugGGuUuuGUGUCGUGa -3'
miRNA:   3'- -GCUGC-CG-----------CUGCugCC-AggCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 11250 0.71 0.59931
Target:  5'- uGACGGCGaACGuCGaGcCCGCGUUGgGg -3'
miRNA:   3'- gCUGCCGC-UGCuGC-CaGGCGCAGCgC- -5'
14266 5' -60.5 NC_003521.1 + 13445 0.66 0.867174
Target:  5'- aCGACGGaCGucaagcgcaGCGGCGGUagCGCcGUCGaCGg -3'
miRNA:   3'- -GCUGCC-GC---------UGCUGCCAg-GCG-CAGC-GC- -5'
14266 5' -60.5 NC_003521.1 + 14052 0.67 0.815152
Target:  5'- aCGACGaCGACuACGGUCCGUc-CGCa -3'
miRNA:   3'- -GCUGCcGCUGcUGCCAGGCGcaGCGc -5'
14266 5' -60.5 NC_003521.1 + 14455 0.68 0.777111
Target:  5'- gCGGCGGCGucagccgccgcucccGCGGCGcuacCCGCGgggCGCGc -3'
miRNA:   3'- -GCUGCCGC---------------UGCUGCca--GGCGCa--GCGC- -5'
14266 5' -60.5 NC_003521.1 + 15289 0.66 0.860237
Target:  5'- --cUGGUGACGACGcGUUCGuCGaCGCGc -3'
miRNA:   3'- gcuGCCGCUGCUGC-CAGGC-GCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 16489 0.67 0.845848
Target:  5'- aCGuGCGGCGACGcuacgagcACGGgCUGCGgCGCu -3'
miRNA:   3'- -GC-UGCCGCUGC--------UGCCaGGCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 17016 0.69 0.72049
Target:  5'- uGGCGGCGGCG-CaGGcCCGuCGUCugGCGg -3'
miRNA:   3'- gCUGCCGCUGCuG-CCaGGC-GCAG--CGC- -5'
14266 5' -60.5 NC_003521.1 + 17423 0.67 0.830804
Target:  5'- gCGcCGG-GGCGccacACGGcCCGCGUCGgGg -3'
miRNA:   3'- -GCuGCCgCUGC----UGCCaGGCGCAGCgC- -5'
14266 5' -60.5 NC_003521.1 + 17773 0.66 0.873932
Target:  5'- cCGcCGGCGGCgGACGGUCagGUGaaggaaacaUCGCa -3'
miRNA:   3'- -GCuGCCGCUG-CUGCCAGg-CGC---------AGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.