miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14266 5' -60.5 NC_003521.1 + 240621 0.71 0.627455
Target:  5'- gCGGCGGCGuGCGGCGGgccggCCG-GUCGg- -3'
miRNA:   3'- -GCUGCCGC-UGCUGCCa----GGCgCAGCgc -5'
14266 5' -60.5 NC_003521.1 + 239688 0.67 0.807113
Target:  5'- gGACGGCaGCGGuuCGuGUCC-CGUCGCc -3'
miRNA:   3'- gCUGCCGcUGCU--GC-CAGGcGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 239521 0.67 0.815152
Target:  5'- uCGcCGGCGcCGuaGCGGaaccauucgUCgGCGUCGCGg -3'
miRNA:   3'- -GCuGCCGCuGC--UGCC---------AGgCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 238294 0.68 0.790639
Target:  5'- uGGCGGCGAgGGCcaguaccucGGauucUCCGCGUCcCGg -3'
miRNA:   3'- gCUGCCGCUgCUG---------CC----AGGCGCAGcGC- -5'
14266 5' -60.5 NC_003521.1 + 238106 0.69 0.738553
Target:  5'- aGGCGGUGACGGCGcucCCGCacgaGUgGCGu -3'
miRNA:   3'- gCUGCCGCUGCUGCca-GGCG----CAgCGC- -5'
14266 5' -60.5 NC_003521.1 + 237993 0.66 0.880509
Target:  5'- uCGuCGGCGAuCGGuCGG-CUGgGUCGCc -3'
miRNA:   3'- -GCuGCCGCU-GCU-GCCaGGCgCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 235281 0.69 0.747471
Target:  5'- aCGAUGGCGGCGGCcgcgccGGcugCCGUcaccGUCGCu -3'
miRNA:   3'- -GCUGCCGCUGCUG------CCa--GGCG----CAGCGc -5'
14266 5' -60.5 NC_003521.1 + 235133 0.66 0.886899
Target:  5'- uGACGGCGcccguuccccGCgGACGGgcgcCCGUGUCuCGa -3'
miRNA:   3'- gCUGCCGC----------UG-CUGCCa---GGCGCAGcGC- -5'
14266 5' -60.5 NC_003521.1 + 234842 0.76 0.353417
Target:  5'- gGACGGCGauaGCGugGGcaUCgGCGUCGUGu -3'
miRNA:   3'- gCUGCCGC---UGCugCC--AGgCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 233938 0.69 0.751015
Target:  5'- gCGACGGCGAggauaaccacgacgaCGACGGaUCCGCuacccaCGCc -3'
miRNA:   3'- -GCUGCCGCU---------------GCUGCC-AGGCGca----GCGc -5'
14266 5' -60.5 NC_003521.1 + 229300 0.68 0.782219
Target:  5'- gGACuGGCGcauguCGACGGUgCGCGgaGCGa -3'
miRNA:   3'- gCUG-CCGCu----GCUGCCAgGCGCagCGC- -5'
14266 5' -60.5 NC_003521.1 + 229081 0.66 0.880509
Target:  5'- aGGCGGCGugGAUGG-CCaaacCGUgGUa -3'
miRNA:   3'- gCUGCCGCugCUGCCaGGc---GCAgCGc -5'
14266 5' -60.5 NC_003521.1 + 224017 0.67 0.845848
Target:  5'- -aGCGGCGGgccCGGCGGUCggggcgggCGCcGUCGCc -3'
miRNA:   3'- gcUGCCGCU---GCUGCCAG--------GCG-CAGCGc -5'
14266 5' -60.5 NC_003521.1 + 223795 0.7 0.674339
Target:  5'- cCGugGGCcgccaGACGACGGgcCUGCGcCGCc -3'
miRNA:   3'- -GCugCCG-----CUGCUGCCa-GGCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 223728 0.67 0.810345
Target:  5'- aCGACGGCGgguccgguggcgggaACGugGGUcgCCGCca-GCGg -3'
miRNA:   3'- -GCUGCCGC---------------UGCugCCA--GGCGcagCGC- -5'
14266 5' -60.5 NC_003521.1 + 223359 0.71 0.589961
Target:  5'- uCGGCGGCGGCcuUGGUCagcaGCGacaUCGCGg -3'
miRNA:   3'- -GCUGCCGCUGcuGCCAGg---CGC---AGCGC- -5'
14266 5' -60.5 NC_003521.1 + 223110 0.66 0.886899
Target:  5'- -uGCGG-GAUGGCGG-CCGUcUCGCGc -3'
miRNA:   3'- gcUGCCgCUGCUGCCaGGCGcAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 223005 0.67 0.823051
Target:  5'- uGGCGGUGGgGGuCGucGUCCGCcgGUCGCa -3'
miRNA:   3'- gCUGCCGCUgCU-GC--CAGGCG--CAGCGc -5'
14266 5' -60.5 NC_003521.1 + 220646 0.7 0.655627
Target:  5'- uGACGucGCGACG-CGGaCCGuCGUCGCc -3'
miRNA:   3'- gCUGC--CGCUGCuGCCaGGC-GCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 218715 0.82 0.159592
Target:  5'- aCGGCGGCGGCGGCGGgcgagaagCgGCGUCGgGa -3'
miRNA:   3'- -GCUGCCGCUGCUGCCa-------GgCGCAGCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.