miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14266 5' -60.5 NC_003521.1 + 168257 0.66 0.880509
Target:  5'- gCGAUGGCGACGcugagaGGUCgCGagacgacgacacCGUCGCc -3'
miRNA:   3'- -GCUGCCGCUGCug----CCAG-GC------------GCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 57659 0.66 0.880509
Target:  5'- gGACGGCGAagaaGACGacgacaccGUCUGgGUCuGCa -3'
miRNA:   3'- gCUGCCGCUg---CUGC--------CAGGCgCAG-CGc -5'
14266 5' -60.5 NC_003521.1 + 116365 0.66 0.880509
Target:  5'- -cGCGGCGGCGaACGcGUgCCGC--CGCGg -3'
miRNA:   3'- gcUGCCGCUGC-UGC-CA-GGCGcaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 237993 0.66 0.880509
Target:  5'- uCGuCGGCGAuCGGuCGG-CUGgGUCGCc -3'
miRNA:   3'- -GCuGCCGCU-GCU-GCCaGGCgCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 70688 0.66 0.880509
Target:  5'- cCGACGGCGucuGCGcCGcaagCUGCGUCgGCGc -3'
miRNA:   3'- -GCUGCCGC---UGCuGCca--GGCGCAG-CGC- -5'
14266 5' -60.5 NC_003521.1 + 31305 0.66 0.880509
Target:  5'- gCGGCaGCGGCGACGGUcaCCGUGa---- -3'
miRNA:   3'- -GCUGcCGCUGCUGCCA--GGCGCagcgc -5'
14266 5' -60.5 NC_003521.1 + 229081 0.66 0.880509
Target:  5'- aGGCGGCGugGAUGG-CCaaacCGUgGUa -3'
miRNA:   3'- gCUGCCGCugCUGCCaGGc---GCAgCGc -5'
14266 5' -60.5 NC_003521.1 + 105222 0.66 0.876585
Target:  5'- aGGCGGuCGACGAagaggaagacauccuCGGaggaCGCGUgCGCGa -3'
miRNA:   3'- gCUGCC-GCUGCU---------------GCCag--GCGCA-GCGC- -5'
14266 5' -60.5 NC_003521.1 + 163769 0.66 0.873932
Target:  5'- aCGGCGGCGGCaacaACGGUa-GCGgCGCc -3'
miRNA:   3'- -GCUGCCGCUGc---UGCCAggCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 17773 0.66 0.873932
Target:  5'- cCGcCGGCGGCgGACGGUCagGUGaaggaaacaUCGCa -3'
miRNA:   3'- -GCuGCCGCUG-CUGCCAGg-CGC---------AGCGc -5'
14266 5' -60.5 NC_003521.1 + 132634 0.66 0.873932
Target:  5'- uCGGCGGCGGCGccaccgGCGGuUCUGCuuccUCGUc -3'
miRNA:   3'- -GCUGCCGCUGC------UGCC-AGGCGc---AGCGc -5'
14266 5' -60.5 NC_003521.1 + 89319 0.66 0.873932
Target:  5'- cCGACGGCGGuaguucACcGUCCGCGaugUCGCa -3'
miRNA:   3'- -GCUGCCGCUgc----UGcCAGGCGC---AGCGc -5'
14266 5' -60.5 NC_003521.1 + 187900 0.66 0.873932
Target:  5'- gGGCGGCGGgGGCaGGUCgaucaGCaGcUCGCGa -3'
miRNA:   3'- gCUGCCGCUgCUG-CCAGg----CG-C-AGCGC- -5'
14266 5' -60.5 NC_003521.1 + 120961 0.66 0.873932
Target:  5'- aGGgGGCGG-GGCGGUuuGCGgucCGCc -3'
miRNA:   3'- gCUgCCGCUgCUGCCAggCGCa--GCGc -5'
14266 5' -60.5 NC_003521.1 + 69491 0.66 0.873932
Target:  5'- aGACGGUGGucguaGACGGcgcaggCCGCGUUGa- -3'
miRNA:   3'- gCUGCCGCUg----CUGCCa-----GGCGCAGCgc -5'
14266 5' -60.5 NC_003521.1 + 108546 0.66 0.873932
Target:  5'- uGGCGGCacACGGucaagaGGUUgGCGUUGCGg -3'
miRNA:   3'- gCUGCCGc-UGCUg-----CCAGgCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 9169 0.66 0.873932
Target:  5'- aCGGCGaGCaagacucgcauGACGugGGuUuuGUGUCGUGa -3'
miRNA:   3'- -GCUGC-CG-----------CUGCugCC-AggCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 109678 0.66 0.873932
Target:  5'- gCGGCGGauGCGAuCGG-CCGagggGUCGCGc -3'
miRNA:   3'- -GCUGCCgcUGCU-GCCaGGCg---CAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 212494 0.66 0.873265
Target:  5'- --uCGGCcacCGGCGGUCCGCaggccgcgccgggGUCGCu -3'
miRNA:   3'- gcuGCCGcu-GCUGCCAGGCG-------------CAGCGc -5'
14266 5' -60.5 NC_003521.1 + 111211 0.66 0.871924
Target:  5'- gGGCGGcCGGCGACucgacuauuagaGCGUCGCGg -3'
miRNA:   3'- gCUGCC-GCUGCUGccagg-------CGCAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.