miRNA display CGI


Results 41 - 50 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14269 3' -56 NC_003521.1 + 223110 0.66 0.953437
Target:  5'- uGCGGGAUG-GCGGCCgucucgcgCAgcACCaGGa- -3'
miRNA:   3'- -CGCUCUACuCGCCGGa-------GU--UGGaCCac -5'
14269 3' -56 NC_003521.1 + 60138 0.66 0.95305
Target:  5'- aGCGAGGaggugucGAGCacgcaGGCCUCGcgccaacGCCUGGa- -3'
miRNA:   3'- -CGCUCUa------CUCG-----CCGGAGU-------UGGACCac -5'
14269 3' -56 NC_003521.1 + 154868 0.67 0.938111
Target:  5'- aCGAGu---GCGGCCUCAugCUgcgcuacaugcugcaGGUGg -3'
miRNA:   3'- cGCUCuacuCGCCGGAGUugGA---------------CCAC- -5'
14269 3' -56 NC_003521.1 + 87002 0.67 0.93623
Target:  5'- gGCGGuGAUGAG-GGCCaCGugCUGGaUGa -3'
miRNA:   3'- -CGCU-CUACUCgCCGGaGUugGACC-AC- -5'
14269 3' -56 NC_003521.1 + 60250 0.66 0.945276
Target:  5'- uGCaGGAcuUGAucgacGUGGCCcaCGACCUGGUGg -3'
miRNA:   3'- -CGcUCU--ACU-----CGCCGGa-GUUGGACCAC- -5'
14269 3' -56 NC_003521.1 + 165447 0.67 0.926284
Target:  5'- gGCGAGggGuGGCaGGCCUUGagcACCaGGUGg -3'
miRNA:   3'- -CGCUCuaC-UCG-CCGGAGU---UGGaCCAC- -5'
14269 3' -56 NC_003521.1 + 234828 0.67 0.920972
Target:  5'- uCGGGGUucGUGGCCgagagCAaguucACCUGGUGg -3'
miRNA:   3'- cGCUCUAcuCGCCGGa----GU-----UGGACCAC- -5'
14269 3' -56 NC_003521.1 + 40202 0.67 0.920972
Target:  5'- aGCu---UGAGCGGCUUC-ACCUGGa- -3'
miRNA:   3'- -CGcucuACUCGCCGGAGuUGGACCac -5'
14269 3' -56 NC_003521.1 + 137267 0.67 0.920972
Target:  5'- aGCGGGcaGAGCgggGGCCccagCGACCUGGa- -3'
miRNA:   3'- -CGCUCuaCUCG---CCGGa---GUUGGACCac -5'
14269 3' -56 NC_003521.1 + 156595 0.8 0.296989
Target:  5'- cCGAGGUGGugcagcGCGGCCUCucgcGCCUGGUGc -3'
miRNA:   3'- cGCUCUACU------CGCCGGAGu---UGGACCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.