miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1427 3' -62.7 NC_001335.1 + 27180 0.66 0.35105
Target:  5'- --aCAcCCCCAGCGUCCCGGUGUUCa -3'
miRNA:   3'- gucGUcGGGGUUGUGGGGCCACGGGg -5'
1427 3' -62.7 NC_001335.1 + 41889 0.66 0.35105
Target:  5'- aCGGCAGCUCg--UAUCCgGGUGCCgCu -3'
miRNA:   3'- -GUCGUCGGGguuGUGGGgCCACGGgG- -5'
1427 3' -62.7 NC_001335.1 + 9776 0.66 0.35105
Target:  5'- -cGaCGGUCCCAgGCuCCCCGa-GCCCCa -3'
miRNA:   3'- guC-GUCGGGGU-UGuGGGGCcaCGGGG- -5'
1427 3' -62.7 NC_001335.1 + 35700 0.66 0.34306
Target:  5'- gUAGCGGCUCCugauCGCCUCuGcauaGCCCCc -3'
miRNA:   3'- -GUCGUCGGGGuu--GUGGGGcCa---CGGGG- -5'
1427 3' -62.7 NC_001335.1 + 5485 0.66 0.327476
Target:  5'- uCGGCAccgccGCCCCGGCACUgCUGGgcaucGUCCUg -3'
miRNA:   3'- -GUCGU-----CGGGGUUGUGG-GGCCa----CGGGG- -5'
1427 3' -62.7 NC_001335.1 + 5948 0.66 0.319882
Target:  5'- uGGCAGCCCauCGGCAacuaCCCGGcagcgGCguuCCCg -3'
miRNA:   3'- gUCGUCGGG--GUUGUg---GGGCCa----CG---GGG- -5'
1427 3' -62.7 NC_001335.1 + 25028 0.66 0.319882
Target:  5'- gGGUAGaUgCGGCGCUCCGcGUGCCCg -3'
miRNA:   3'- gUCGUCgGgGUUGUGGGGC-CACGGGg -5'
1427 3' -62.7 NC_001335.1 + 9488 0.66 0.312422
Target:  5'- uCAGCGGCCCUGAuCGCCUcagCGGagGCCg- -3'
miRNA:   3'- -GUCGUCGGGGUU-GUGGG---GCCa-CGGgg -5'
1427 3' -62.7 NC_001335.1 + 38214 0.66 0.305094
Target:  5'- aGGCAGCCCCGguACAUCUCa-UGUCCa -3'
miRNA:   3'- gUCGUCGGGGU--UGUGGGGccACGGGg -5'
1427 3' -62.7 NC_001335.1 + 13116 0.67 0.297899
Target:  5'- gAGCcuCCUCGACA--CCGGUGCCCg -3'
miRNA:   3'- gUCGucGGGGUUGUggGGCCACGGGg -5'
1427 3' -62.7 NC_001335.1 + 39202 0.67 0.297899
Target:  5'- aCGGUucuGCaCCCggUACCCCGGaGaCCUCu -3'
miRNA:   3'- -GUCGu--CG-GGGuuGUGGGGCCaC-GGGG- -5'
1427 3' -62.7 NC_001335.1 + 28181 0.67 0.293645
Target:  5'- uCGGCGucuacaccgccgaacGCCCCGACAacguCCCCGaGgacUGCCCg -3'
miRNA:   3'- -GUCGU---------------CGGGGUUGU----GGGGC-C---ACGGGg -5'
1427 3' -62.7 NC_001335.1 + 26148 0.67 0.290836
Target:  5'- -cGCGGCCagaaCCcGCGCCUCGGgGCCUg -3'
miRNA:   3'- guCGUCGG----GGuUGUGGGGCCaCGGGg -5'
1427 3' -62.7 NC_001335.1 + 99 0.67 0.290836
Target:  5'- gGGCGcGUgaacuCCC-ACACCCCGGUGUaguuacauCCCg -3'
miRNA:   3'- gUCGU-CG-----GGGuUGUGGGGCCACG--------GGG- -5'
1427 3' -62.7 NC_001335.1 + 15822 0.67 0.290836
Target:  5'- aGGuCAGCCCgAACACCaaGGaGUUCCg -3'
miRNA:   3'- gUC-GUCGGGgUUGUGGggCCaCGGGG- -5'
1427 3' -62.7 NC_001335.1 + 23400 0.67 0.290137
Target:  5'- gGGCuGCCgaAGCugucgaaGCUCCGGUGCCuCCg -3'
miRNA:   3'- gUCGuCGGggUUG-------UGGGGCCACGG-GG- -5'
1427 3' -62.7 NC_001335.1 + 51648 0.67 0.283905
Target:  5'- uGGCugucaAGCCCUAAuCGCaaaUUGGUGCCCUa -3'
miRNA:   3'- gUCG-----UCGGGGUU-GUGg--GGCCACGGGG- -5'
1427 3' -62.7 NC_001335.1 + 3443 0.67 0.26325
Target:  5'- uCAGCGuguacguGCCuCCGGuCGCCCCGGUGacauagaCCUg -3'
miRNA:   3'- -GUCGU-------CGG-GGUU-GUGGGGCCACg------GGG- -5'
1427 3' -62.7 NC_001335.1 + 32980 0.68 0.257486
Target:  5'- gAGCAccGCCCCugccCAgCCCGaGccgGCCCCg -3'
miRNA:   3'- gUCGU--CGGGGuu--GUgGGGC-Ca--CGGGG- -5'
1427 3' -62.7 NC_001335.1 + 23610 0.68 0.257486
Target:  5'- aGGUcuGGCCUgcguuCACCCCGGUGCUgaCCa -3'
miRNA:   3'- gUCG--UCGGGguu--GUGGGGCCACGG--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.