miRNA display CGI


Results 61 - 80 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 84200 0.66 0.71136
Target:  5'- aGCCcagGGCGuCGcGCaGCaCCAGGCgCGAGAg -3'
miRNA:   3'- -CGG---CCGC-GC-CGcCG-GGUCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 84553 0.67 0.636851
Target:  5'- aGCCGcuuguucaGCGaGCGGCCCuGGUUCGGGAu -3'
miRNA:   3'- -CGGCcg------CGC-CGCCGGGuCUGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 86349 0.66 0.692009
Target:  5'- uGCCGGCGcCGGCGGUgCCGGugaccaacagcguGCggaaGGGGa -3'
miRNA:   3'- -CGGCCGC-GCCGCCG-GGUC-------------UGag--CUCU- -5'
14272 3' -63.5 NC_003521.1 + 86693 0.67 0.646244
Target:  5'- cGCUGGCGCuGCcGCCCuugcccGGCcgCGAGAu -3'
miRNA:   3'- -CGGCCGCGcCGcCGGGu-----CUGa-GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 86890 0.66 0.692935
Target:  5'- -aCGGCGCGGCGGgU--GGC-CGAGGa -3'
miRNA:   3'- cgGCCGCGCCGCCgGguCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 87270 0.69 0.552878
Target:  5'- cGCCGuGCGC-GUGGCCaaCGGGCcCGAGGu -3'
miRNA:   3'- -CGGC-CGCGcCGCCGG--GUCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 87735 0.68 0.571347
Target:  5'- cGgCGGCGUGGUgGGCCCcGGCcCGGGc -3'
miRNA:   3'- -CgGCCGCGCCG-CCGGGuCUGaGCUCu -5'
14272 3' -63.5 NC_003521.1 + 88671 0.8 0.120121
Target:  5'- gGUCGGUGggcCGGCGGCCCGG-CUCGGGGa -3'
miRNA:   3'- -CGGCCGC---GCCGCCGGGUCuGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 90093 0.69 0.543709
Target:  5'- aGCCGGCccaGGacguGGCCCAcGGC-CGAGAg -3'
miRNA:   3'- -CGGCCGcg-CCg---CCGGGU-CUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 92403 0.74 0.299156
Target:  5'- cGCCGGCGCGGCcGCCCGcaccauGGCUCc--- -3'
miRNA:   3'- -CGGCCGCGCCGcCGGGU------CUGAGcucu -5'
14272 3' -63.5 NC_003521.1 + 94408 0.7 0.498704
Target:  5'- aGCCGcGCagguugacGCGGCGGCCCAuGACgucucucaGGGGg -3'
miRNA:   3'- -CGGC-CG--------CGCCGCCGGGU-CUGag------CUCU- -5'
14272 3' -63.5 NC_003521.1 + 94481 0.66 0.729558
Target:  5'- -aCGGCGCGGUGauGCCUccGGA-UCGGGGa -3'
miRNA:   3'- cgGCCGCGCCGC--CGGG--UCUgAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 94857 0.68 0.612431
Target:  5'- cGCCaGCucauagauguugaGGCGGCCCAGcaGCUCGGGc -3'
miRNA:   3'- -CGGcCGcg-----------CCGCCGGGUC--UGAGCUCu -5'
14272 3' -63.5 NC_003521.1 + 95546 0.72 0.374734
Target:  5'- cGCCGGCGCgcgagcuGGCcGCCgAGGC-CGAGGa -3'
miRNA:   3'- -CGGCCGCG-------CCGcCGGgUCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 96399 0.69 0.50758
Target:  5'- aCCGucCGCGGUGGCCaacaGGcGCUCGAGGu -3'
miRNA:   3'- cGGCc-GCGCCGCCGGg---UC-UGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 96712 0.67 0.664994
Target:  5'- uCCaGGcCGCGGCGGUCCAGcagccGCaUGAGGc -3'
miRNA:   3'- cGG-CC-GCGCCGCCGGGUC-----UGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 96785 0.7 0.455436
Target:  5'- cGCCGGCagcaGCGGCGGCgCuCGGGCaCGAu- -3'
miRNA:   3'- -CGGCCG----CGCCGCCG-G-GUCUGaGCUcu -5'
14272 3' -63.5 NC_003521.1 + 98475 0.71 0.447026
Target:  5'- cGgCGGcCGCGGCGGCCguGGCggCGGc- -3'
miRNA:   3'- -CgGCC-GCGCCGCCGGguCUGa-GCUcu -5'
14272 3' -63.5 NC_003521.1 + 99950 0.69 0.534591
Target:  5'- cGCaggGGgGCGGCGGCgCCucGGC-CGAGAc -3'
miRNA:   3'- -CGg--CCgCGCCGCCG-GGu-CUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 100244 0.67 0.664994
Target:  5'- cGCCGGcCGCgaaauccucgGGCGGCgCCuGGgUgGAGAg -3'
miRNA:   3'- -CGGCC-GCG----------CCGCCG-GGuCUgAgCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.