miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 59606 0.67 0.627455
Target:  5'- -aCGGUagugGCGGCGGCCCcGGCggCGAc- -3'
miRNA:   3'- cgGCCG----CGCCGCCGGGuCUGa-GCUcu -5'
14272 3' -63.5 NC_003521.1 + 64604 0.68 0.618063
Target:  5'- gGCUGGCGCGGgacgacacgcuuCGGCCgCAGGucUUCGAc- -3'
miRNA:   3'- -CGGCCGCGCC------------GCCGG-GUCU--GAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 64764 0.66 0.71136
Target:  5'- gGCCGGCGCGGCa--CCGGGCg----- -3'
miRNA:   3'- -CGGCCGCGCCGccgGGUCUGagcucu -5'
14272 3' -63.5 NC_003521.1 + 65716 0.69 0.552878
Target:  5'- -gCGGCgccGCGGCGGCCCuGGC-CGGc- -3'
miRNA:   3'- cgGCCG---CGCCGCCGGGuCUGaGCUcu -5'
14272 3' -63.5 NC_003521.1 + 69706 0.68 0.57506
Target:  5'- uGUCGGUgGCGGCGGCCCuGagguacgcgguaacgGCgggCGGGGa -3'
miRNA:   3'- -CGGCCG-CGCCGCCGGGuC---------------UGa--GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 69869 0.66 0.683655
Target:  5'- gGCCGccGCGCaGCGccacGCCCAGGCcauaGAGAa -3'
miRNA:   3'- -CGGC--CGCGcCGC----CGGGUCUGag--CUCU- -5'
14272 3' -63.5 NC_003521.1 + 71394 0.66 0.728654
Target:  5'- cGCCGucguccgcgugaGCgagGCGGCGGCCCcgaaccugacagaGGACgaggCGGGGa -3'
miRNA:   3'- -CGGC------------CG---CGCCGCCGGG-------------UCUGa---GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 72115 0.68 0.618063
Target:  5'- aCCGGCgGCGGUGGagauucaCCuGAC-CGAGGa -3'
miRNA:   3'- cGGCCG-CGCCGCCg------GGuCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 74587 0.66 0.71136
Target:  5'- cGgCGGCGCGGCGuCCCGcGGC-CGGc- -3'
miRNA:   3'- -CgGCCGCGCCGCcGGGU-CUGaGCUcu -5'
14272 3' -63.5 NC_003521.1 + 76232 0.66 0.702172
Target:  5'- gGCCgguGGCGUGGCGGUuacugucucgCCAGcACcgguggCGAGAg -3'
miRNA:   3'- -CGG---CCGCGCCGCCG----------GGUC-UGa-----GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 76493 0.68 0.59931
Target:  5'- cGCCGggacGCGUGGCGGCUguGACUg---- -3'
miRNA:   3'- -CGGC----CGCGCCGCCGGguCUGAgcucu -5'
14272 3' -63.5 NC_003521.1 + 76871 0.66 0.729558
Target:  5'- uUCGGCGUccGCGGCCgAGACUCc--- -3'
miRNA:   3'- cGGCCGCGc-CGCCGGgUCUGAGcucu -5'
14272 3' -63.5 NC_003521.1 + 77459 0.7 0.49782
Target:  5'- gGCCGGCGCuccuucuGGCGGUUCAuGAggCGGGGa -3'
miRNA:   3'- -CGGCCGCG-------CCGCCGGGU-CUgaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 77721 0.66 0.683655
Target:  5'- uGuuGGCGaCGGCGGCCUcgguGGGCggCGucuGGu -3'
miRNA:   3'- -CggCCGC-GCCGCCGGG----UCUGa-GCu--CU- -5'
14272 3' -63.5 NC_003521.1 + 77733 0.66 0.71136
Target:  5'- cGCUGGCGCccgaGGaCGGgCCGGcCUCGGc- -3'
miRNA:   3'- -CGGCCGCG----CC-GCCgGGUCuGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 78456 0.68 0.59931
Target:  5'- uUCGGCGCGGCugggaacgcGGCCCGGcGCgCGAc- -3'
miRNA:   3'- cGGCCGCGCCG---------CCGGGUC-UGaGCUcu -5'
14272 3' -63.5 NC_003521.1 + 78543 0.66 0.720491
Target:  5'- cCCGGCGUGaCGGUgCAGagGCUgGGGAg -3'
miRNA:   3'- cGGCCGCGCcGCCGgGUC--UGAgCUCU- -5'
14272 3' -63.5 NC_003521.1 + 79040 0.72 0.370997
Target:  5'- gGCCGGCGUgacagacauggcguaGGgGGUCCGgGGCUCGGGc -3'
miRNA:   3'- -CGGCCGCG---------------CCgCCGGGU-CUGAGCUCu -5'
14272 3' -63.5 NC_003521.1 + 80143 0.72 0.368026
Target:  5'- gGCCGGUGCuGCGcGUCCAGccGCUgGAGGg -3'
miRNA:   3'- -CGGCCGCGcCGC-CGGGUC--UGAgCUCU- -5'
14272 3' -63.5 NC_003521.1 + 83592 0.68 0.589961
Target:  5'- gGUCGGaccuCGCGGCGGCgUAuGACggCGGGAc -3'
miRNA:   3'- -CGGCC----GCGCCGCCGgGU-CUGa-GCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.