miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 197002 0.66 0.692935
Target:  5'- gGCCGGCgGCGGCuGaCCCGGcuGCUgCGAc- -3'
miRNA:   3'- -CGGCCG-CGCCGcC-GGGUC--UGA-GCUcu -5'
14272 3' -63.5 NC_003521.1 + 164768 0.66 0.701251
Target:  5'- cGCCGucaucaaGCGUcuGGCGGCCC--GCUcCGAGGa -3'
miRNA:   3'- -CGGC-------CGCG--CCGCCGGGucUGA-GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 86349 0.66 0.692009
Target:  5'- uGCCGGCGcCGGCGGUgCCGGugaccaacagcguGCggaaGGGGa -3'
miRNA:   3'- -CGGCCGC-GCCGCCG-GGUC-------------UGag--CUCU- -5'
14272 3' -63.5 NC_003521.1 + 192040 0.66 0.692935
Target:  5'- cGCCGGCGUGcGCGGC--AGACgCGGc- -3'
miRNA:   3'- -CGGCCGCGC-CGCCGggUCUGaGCUcu -5'
14272 3' -63.5 NC_003521.1 + 147469 0.66 0.701251
Target:  5'- -aUGGCGCgacaggccgugaaGGUGGCCCAGA--UGAGGa -3'
miRNA:   3'- cgGCCGCG-------------CCGCCGGGUCUgaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 6394 0.66 0.720491
Target:  5'- cGCCGcagcuacCGCGGCGGCgaCGGGucuugccgcCUCGGGAc -3'
miRNA:   3'- -CGGCc------GCGCCGCCGg-GUCU---------GAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 120932 0.66 0.720491
Target:  5'- uGCCcGCgGCGGCGGCuCCGG---CGAGGg -3'
miRNA:   3'- -CGGcCG-CGCCGCCG-GGUCugaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 12137 0.66 0.720491
Target:  5'- uCgGGUGCGGCGGCCUuaauaaAGugUgGAu- -3'
miRNA:   3'- cGgCCGCGCCGCCGGG------UCugAgCUcu -5'
14272 3' -63.5 NC_003521.1 + 49580 0.66 0.71958
Target:  5'- cGUgGGcCGCGGCGccGCCUccucccaAGACUCGAu- -3'
miRNA:   3'- -CGgCC-GCGCCGC--CGGG-------UCUGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 224737 0.66 0.71136
Target:  5'- cGCCGaCGCaGGCGGCCagcGCgUCGGGGc -3'
miRNA:   3'- -CGGCcGCG-CCGCCGGgucUG-AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 74587 0.66 0.71136
Target:  5'- cGgCGGCGCGGCGuCCCGcGGC-CGGc- -3'
miRNA:   3'- -CgGCCGCGCCGCcGGGU-CUGaGCUcu -5'
14272 3' -63.5 NC_003521.1 + 64764 0.66 0.71136
Target:  5'- gGCCGGCGCGGCa--CCGGGCg----- -3'
miRNA:   3'- -CGGCCGCGCCGccgGGUCUGagcucu -5'
14272 3' -63.5 NC_003521.1 + 214823 0.66 0.710443
Target:  5'- gGCgCGGCGaCGGCGGuUCCAuGCUguuugcugcccggCGAGAg -3'
miRNA:   3'- -CG-GCCGC-GCCGCC-GGGUcUGA-------------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 10497 0.66 0.692935
Target:  5'- cGCCGGCGgGGaUGGCguggccccCCAGGCggcgCGAc- -3'
miRNA:   3'- -CGGCCGCgCC-GCCG--------GGUCUGa---GCUcu -5'
14272 3' -63.5 NC_003521.1 + 132601 0.66 0.692935
Target:  5'- cGgCGGCGuCGGCguccgcaacGGCuuCCAGACUCGGc- -3'
miRNA:   3'- -CgGCCGC-GCCG---------CCG--GGUCUGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 115393 0.66 0.692935
Target:  5'- uGCagGGCGCgGGCGGCcgccacggccuCCGGACUCa--- -3'
miRNA:   3'- -CGg-CCGCG-CCGCCG-----------GGUCUGAGcucu -5'
14272 3' -63.5 NC_003521.1 + 32637 0.66 0.692935
Target:  5'- uCCGucauCGCGGCGGCgCAGACgacggcggaaagUCGAGc -3'
miRNA:   3'- cGGCc---GCGCCGCCGgGUCUG------------AGCUCu -5'
14272 3' -63.5 NC_003521.1 + 164841 0.66 0.692009
Target:  5'- aCCGGCG-GcCGGCgCCAGACUucuuccuccucgaCGAGAa -3'
miRNA:   3'- cGGCCGCgCcGCCG-GGUCUGA-------------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 59606 0.67 0.627455
Target:  5'- -aCGGUagugGCGGCGGCCCcGGCggCGAc- -3'
miRNA:   3'- cgGCCG----CGCCGCCGGGuCUGa-GCUcu -5'
14272 3' -63.5 NC_003521.1 + 33448 0.67 0.627455
Target:  5'- cCCGGCagguagGCGaaggcGUGGCCCuGACUgGAGAc -3'
miRNA:   3'- cGGCCG------CGC-----CGCCGGGuCUGAgCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.