miRNA display CGI


Results 41 - 60 of 193 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 212888 0.7 0.463932
Target:  5'- cGCgGGCGaCGGgGGUgUcgguGGACUCGAGGa -3'
miRNA:   3'- -CGgCCGC-GCCgCCGgG----UCUGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 133169 0.7 0.463932
Target:  5'- aGCCGGgacaccagcaGUGGCGGCCUcGGCgaUCGGGAc -3'
miRNA:   3'- -CGGCCg---------CGCCGCCGGGuCUG--AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 168541 0.7 0.463932
Target:  5'- gGCCaGCGCGGCGGCggcgcuggCGGGCUgCGGGu -3'
miRNA:   3'- -CGGcCGCGCCGCCGg-------GUCUGA-GCUCu -5'
14272 3' -63.5 NC_003521.1 + 39586 0.7 0.472509
Target:  5'- uGCCGGCGuCGGCGGUCCuGcCcUGGGu -3'
miRNA:   3'- -CGGCCGC-GCCGCCGGGuCuGaGCUCu -5'
14272 3' -63.5 NC_003521.1 + 16797 0.7 0.480296
Target:  5'- uGCCGGCGCccauuauGG-GGCgCAGAUcCGAGAu -3'
miRNA:   3'- -CGGCCGCG-------CCgCCGgGUCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 17502 0.7 0.481165
Target:  5'- cGCCGGUcacgGCGGUucccGGCCCGGcgGCgCGGGAu -3'
miRNA:   3'- -CGGCCG----CGCCG----CCGGGUC--UGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 181470 0.7 0.481165
Target:  5'- aGUCGGCGCaGaCGGCCCAucccaGCUCGGuGAa -3'
miRNA:   3'- -CGGCCGCGcC-GCCGGGUc----UGAGCU-CU- -5'
14272 3' -63.5 NC_003521.1 + 133379 0.7 0.481165
Target:  5'- cGCCGGCacagcGCGGCGGUCCGcgcuuucgcgucGGCUCucaGGAa -3'
miRNA:   3'- -CGGCCG-----CGCCGCCGGGU------------CUGAGc--UCU- -5'
14272 3' -63.5 NC_003521.1 + 162590 0.7 0.481165
Target:  5'- uGCCGGCuGCGGUGGCaCUc-GCUCGAc- -3'
miRNA:   3'- -CGGCCG-CGCCGCCG-GGucUGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 214510 0.7 0.487271
Target:  5'- aGCCGGCccuggaagcGCGGacagcgcguggcccUGGCCUGGcCUCGAGAc -3'
miRNA:   3'- -CGGCCG---------CGCC--------------GCCGGGUCuGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 53200 0.7 0.489898
Target:  5'- -gCGGCGC-GCGGCCCGG-CUCGc-- -3'
miRNA:   3'- cgGCCGCGcCGCCGGGUCuGAGCucu -5'
14272 3' -63.5 NC_003521.1 + 238446 0.7 0.489898
Target:  5'- gGCaggaGGCGCagGGCGGCCUcGGCgggCGGGGc -3'
miRNA:   3'- -CGg---CCGCG--CCGCCGGGuCUGa--GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 38218 0.7 0.489898
Target:  5'- gGCaggaGGCGCagGGCGGCCUcGGCgggCGGGGc -3'
miRNA:   3'- -CGg---CCGCG--CCGCCGGGuCUGa--GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 77459 0.7 0.49782
Target:  5'- gGCCGGCGCuccuucuGGCGGUUCAuGAggCGGGGa -3'
miRNA:   3'- -CGGCCGCG-------CCGCCGGGU-CUgaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 131107 0.7 0.498704
Target:  5'- -aCGGCGgGGCGGCgCGGcuGC-CGGGAa -3'
miRNA:   3'- cgGCCGCgCCGCCGgGUC--UGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 94408 0.7 0.498704
Target:  5'- aGCCGcGCagguugacGCGGCGGCCCAuGACgucucucaGGGGg -3'
miRNA:   3'- -CGGC-CG--------CGCCGCCGGGU-CUGag------CUCU- -5'
14272 3' -63.5 NC_003521.1 + 182049 0.7 0.498704
Target:  5'- cGCCGGCGCGcGCcGCCCugcaguGGCUgGAc- -3'
miRNA:   3'- -CGGCCGCGC-CGcCGGGu-----CUGAgCUcu -5'
14272 3' -63.5 NC_003521.1 + 237167 0.69 0.50491
Target:  5'- cCCGGCcgccgaggcagacgGCGGCGGCCguGGCacgcuaGAGAa -3'
miRNA:   3'- cGGCCG--------------CGCCGCCGGguCUGag----CUCU- -5'
14272 3' -63.5 NC_003521.1 + 105943 0.69 0.50758
Target:  5'- gGCCGGCGCGGauGaugaCCGuGugUCGGGu -3'
miRNA:   3'- -CGGCCGCGCCgcCg---GGU-CugAGCUCu -5'
14272 3' -63.5 NC_003521.1 + 6085 0.69 0.50758
Target:  5'- gGCCGGUGCGGCGGCguuccgCCAcGGCUa---- -3'
miRNA:   3'- -CGGCCGCGCCGCCG------GGU-CUGAgcucu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.