miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 164768 0.66 0.701251
Target:  5'- cGCCGucaucaaGCGUcuGGCGGCCC--GCUcCGAGGa -3'
miRNA:   3'- -CGGC-------CGCG--CCGCCGGGucUGA-GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 147469 0.66 0.701251
Target:  5'- -aUGGCGCgacaggccgugaaGGUGGCCCAGA--UGAGGa -3'
miRNA:   3'- cgGCCGCG-------------CCGCCGGGUCUgaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 197002 0.66 0.692935
Target:  5'- gGCCGGCgGCGGCuGaCCCGGcuGCUgCGAc- -3'
miRNA:   3'- -CGGCCG-CGCCGcC-GGGUC--UGA-GCUcu -5'
14272 3' -63.5 NC_003521.1 + 10497 0.66 0.692935
Target:  5'- cGCCGGCGgGGaUGGCguggccccCCAGGCggcgCGAc- -3'
miRNA:   3'- -CGGCCGCgCC-GCCG--------GGUCUGa---GCUcu -5'
14272 3' -63.5 NC_003521.1 + 192040 0.66 0.692935
Target:  5'- cGCCGGCGUGcGCGGC--AGACgCGGc- -3'
miRNA:   3'- -CGGCCGCGC-CGCCGggUCUGaGCUcu -5'
14272 3' -63.5 NC_003521.1 + 121036 0.66 0.692935
Target:  5'- cGCUGGCGCcggaaGGUGGaCCgCAGcCUgGAGGc -3'
miRNA:   3'- -CGGCCGCG-----CCGCC-GG-GUCuGAgCUCU- -5'
14272 3' -63.5 NC_003521.1 + 132601 0.66 0.692935
Target:  5'- cGgCGGCGuCGGCguccgcaacGGCuuCCAGACUCGGc- -3'
miRNA:   3'- -CgGCCGC-GCCG---------CCG--GGUCUGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 32637 0.66 0.692935
Target:  5'- uCCGucauCGCGGCGGCgCAGACgacggcggaaagUCGAGc -3'
miRNA:   3'- cGGCc---GCGCCGCCGgGUCUG------------AGCUCu -5'
14272 3' -63.5 NC_003521.1 + 115393 0.66 0.692935
Target:  5'- uGCagGGCGCgGGCGGCcgccacggccuCCGGACUCa--- -3'
miRNA:   3'- -CGg-CCGCG-CCGCCG-----------GGUCUGAGcucu -5'
14272 3' -63.5 NC_003521.1 + 86890 0.66 0.692935
Target:  5'- -aCGGCGCGGCGGgU--GGC-CGAGGa -3'
miRNA:   3'- cgGCCGCGCCGCCgGguCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 86349 0.66 0.692009
Target:  5'- uGCCGGCGcCGGCGGUgCCGGugaccaacagcguGCggaaGGGGa -3'
miRNA:   3'- -CGGCCGC-GCCGCCG-GGUC-------------UGag--CUCU- -5'
14272 3' -63.5 NC_003521.1 + 148631 0.66 0.692009
Target:  5'- gGCCGG-GCGGCgaaaaacGGCCCcGAgCUCGGcGGg -3'
miRNA:   3'- -CGGCCgCGCCG-------CCGGGuCU-GAGCU-CU- -5'
14272 3' -63.5 NC_003521.1 + 164841 0.66 0.692009
Target:  5'- aCCGGCG-GcCGGCgCCAGACUucuuccuccucgaCGAGAa -3'
miRNA:   3'- cGGCCGCgCcGCCG-GGUCUGA-------------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 36805 0.66 0.683655
Target:  5'- aGCCGcuCGCGGaCGGC--GGACUCGGGc -3'
miRNA:   3'- -CGGCc-GCGCC-GCCGggUCUGAGCUCu -5'
14272 3' -63.5 NC_003521.1 + 69869 0.66 0.683655
Target:  5'- gGCCGccGCGCaGCGccacGCCCAGGCcauaGAGAa -3'
miRNA:   3'- -CGGC--CGCGcCGC----CGGGUCUGag--CUCU- -5'
14272 3' -63.5 NC_003521.1 + 77721 0.66 0.683655
Target:  5'- uGuuGGCGaCGGCGGCCUcgguGGGCggCGucuGGu -3'
miRNA:   3'- -CggCCGC-GCCGCCGGG----UCUGa-GCu--CU- -5'
14272 3' -63.5 NC_003521.1 + 163697 0.66 0.683655
Target:  5'- -gCGGCGCcaacGGCGGCCacgAGGCcgaauccugcgUCGGGAu -3'
miRNA:   3'- cgGCCGCG----CCGCCGGg--UCUG-----------AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 166281 0.66 0.683655
Target:  5'- cGCaCGGCGCGGCuGGUCCgcguGGcCUCGu-- -3'
miRNA:   3'- -CG-GCCGCGCCG-CCGGG----UCuGAGCucu -5'
14272 3' -63.5 NC_003521.1 + 154245 0.67 0.674339
Target:  5'- cCCGGCuGCGGCGuGCCCuGcCUCcAGu -3'
miRNA:   3'- cGGCCG-CGCCGC-CGGGuCuGAGcUCu -5'
14272 3' -63.5 NC_003521.1 + 101195 0.67 0.674339
Target:  5'- cCCGGCG-GGCGGaUCUuGAC-CGAGAu -3'
miRNA:   3'- cGGCCGCgCCGCC-GGGuCUGaGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.