miRNA display CGI


Results 61 - 80 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 103497 0.67 0.671538
Target:  5'- cGCUGGCGaaagGGCGaGCCCAGcagcaggcgcgcgaACUCGcucauGGAg -3'
miRNA:   3'- -CGGCCGCg---CCGC-CGGGUC--------------UGAGC-----UCU- -5'
14272 3' -63.5 NC_003521.1 + 96712 0.67 0.664994
Target:  5'- uCCaGGcCGCGGCGGUCCAGcagccGCaUGAGGc -3'
miRNA:   3'- cGG-CC-GCGCCGCCGGGUC-----UGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 138795 0.67 0.664994
Target:  5'- uGCUGcGCGCcGUGGCCCAGguGCUCa--- -3'
miRNA:   3'- -CGGC-CGCGcCGCCGGGUC--UGAGcucu -5'
14272 3' -63.5 NC_003521.1 + 100244 0.67 0.664994
Target:  5'- cGCCGGcCGCgaaauccucgGGCGGCgCCuGGgUgGAGAg -3'
miRNA:   3'- -CGGCC-GCG----------CCGCCG-GGuCUgAgCUCU- -5'
14272 3' -63.5 NC_003521.1 + 18736 0.67 0.664994
Target:  5'- uGCCGGCGCugcagGGCGGgCUgugggaGGACaacgaCGAGAc -3'
miRNA:   3'- -CGGCCGCG-----CCGCCgGG------UCUGa----GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 155383 0.67 0.664994
Target:  5'- cGCCGGCGCGGacgacgaGGCC--GGCggGGGGc -3'
miRNA:   3'- -CGGCCGCGCCg------CCGGguCUGagCUCU- -5'
14272 3' -63.5 NC_003521.1 + 147841 0.67 0.664994
Target:  5'- uGCCGuGCaGcCGGgGGUgCAGGCgCGAGAa -3'
miRNA:   3'- -CGGC-CG-C-GCCgCCGgGUCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 110839 0.67 0.664994
Target:  5'- cGCCGGCGCaGCGGCagcgaCGGuGCaCGuAGAg -3'
miRNA:   3'- -CGGCCGCGcCGCCGg----GUC-UGaGC-UCU- -5'
14272 3' -63.5 NC_003521.1 + 145867 0.67 0.655627
Target:  5'- cCCGGCgGCgGGCGGCgCC-GACgaCGAGGc -3'
miRNA:   3'- cGGCCG-CG-CCGCCG-GGuCUGa-GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 40179 0.67 0.655627
Target:  5'- cGuuGGCGUGcCGGUCCAGguuaaGCUUGAGc -3'
miRNA:   3'- -CggCCGCGCcGCCGGGUC-----UGAGCUCu -5'
14272 3' -63.5 NC_003521.1 + 186927 0.67 0.654689
Target:  5'- cGCCGGUggcggggGCGGCGGCgaaCGcaACUCGAGc -3'
miRNA:   3'- -CGGCCG-------CGCCGCCGg--GUc-UGAGCUCu -5'
14272 3' -63.5 NC_003521.1 + 43554 0.67 0.646244
Target:  5'- cGCC-GCGacagaGGCGGCCgCuGACUgGGGGg -3'
miRNA:   3'- -CGGcCGCg----CCGCCGG-GuCUGAgCUCU- -5'
14272 3' -63.5 NC_003521.1 + 197184 0.67 0.646244
Target:  5'- gGCUGGaggcgGUGGCGGuCCCAG-CgCGGGAc -3'
miRNA:   3'- -CGGCCg----CGCCGCC-GGGUCuGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 86693 0.67 0.646244
Target:  5'- cGCUGGCGCuGCcGCCCuugcccGGCcgCGAGAu -3'
miRNA:   3'- -CGGCCGCGcCGcCGGGu-----CUGa-GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 102119 0.67 0.646244
Target:  5'- aGCCaGGCGCccguGCcGCCCAGGCUCa--- -3'
miRNA:   3'- -CGG-CCGCGc---CGcCGGGUCUGAGcucu -5'
14272 3' -63.5 NC_003521.1 + 109424 0.67 0.646244
Target:  5'- -aCGGCGauGCGGUCCAGGCU-GAc- -3'
miRNA:   3'- cgGCCGCgcCGCCGGGUCUGAgCUcu -5'
14272 3' -63.5 NC_003521.1 + 155161 0.67 0.636851
Target:  5'- cGCCGGCucggaacaGCuGGCGGCCgCGGcuGC-CGGGGg -3'
miRNA:   3'- -CGGCCG--------CG-CCGCCGG-GUC--UGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 84553 0.67 0.636851
Target:  5'- aGCCGcuuguucaGCGaGCGGCCCuGGUUCGGGAu -3'
miRNA:   3'- -CGGCcg------CGC-CGCCGGGuCUGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 102350 0.67 0.636851
Target:  5'- cGCCGGgGUGGCGGCa-GGcGCUCuuGAa -3'
miRNA:   3'- -CGGCCgCGCCGCCGggUC-UGAGcuCU- -5'
14272 3' -63.5 NC_003521.1 + 33448 0.67 0.627455
Target:  5'- cCCGGCagguagGCGaaggcGUGGCCCuGACUgGAGAc -3'
miRNA:   3'- cGGCCG------CGC-----CGCCGGGuCUGAgCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.