miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 55767 0.66 0.720491
Target:  5'- gGCgCGGC-CGGCGGUaCAG-CUCGaAGAu -3'
miRNA:   3'- -CG-GCCGcGCCGCCGgGUCuGAGC-UCU- -5'
14272 3' -63.5 NC_003521.1 + 49580 0.66 0.71958
Target:  5'- cGUgGGcCGCGGCGccGCCUccucccaAGACUCGAu- -3'
miRNA:   3'- -CGgCC-GCGCCGC--CGGG-------UCUGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 149729 0.66 0.716846
Target:  5'- aCCGGCGCaGGCgcagacgGGCCCcuguugcguuguccGGACaacCGAGAu -3'
miRNA:   3'- cGGCCGCG-CCG-------CCGGG--------------UCUGa--GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 135242 0.66 0.71502
Target:  5'- cGCCGGCggcggcgacgacacgGCGGCGGaCgCC-GACgaCGAGGa -3'
miRNA:   3'- -CGGCCG---------------CGCCGCC-G-GGuCUGa-GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 84200 0.66 0.71136
Target:  5'- aGCCcagGGCGuCGcGCaGCaCCAGGCgCGAGAg -3'
miRNA:   3'- -CGG---CCGC-GC-CGcCG-GGUCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 210425 0.66 0.71136
Target:  5'- gGUCGGCGUgGGCGGCgaCGGcagcguacuguGCUaCGAGAu -3'
miRNA:   3'- -CGGCCGCG-CCGCCGg-GUC-----------UGA-GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 111591 0.66 0.71136
Target:  5'- uGCCGcGCGUGGCcagcGGCgCCGGACUg---- -3'
miRNA:   3'- -CGGC-CGCGCCG----CCG-GGUCUGAgcucu -5'
14272 3' -63.5 NC_003521.1 + 77733 0.66 0.71136
Target:  5'- cGCUGGCGCccgaGGaCGGgCCGGcCUCGGc- -3'
miRNA:   3'- -CGGCCGCG----CC-GCCgGGUCuGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 64764 0.66 0.71136
Target:  5'- gGCCGGCGCGGCa--CCGGGCg----- -3'
miRNA:   3'- -CGGCCGCGCCGccgGGUCUGagcucu -5'
14272 3' -63.5 NC_003521.1 + 224737 0.66 0.71136
Target:  5'- cGCCGaCGCaGGCGGCCagcGCgUCGGGGc -3'
miRNA:   3'- -CGGCcGCG-CCGCCGGgucUG-AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 74587 0.66 0.71136
Target:  5'- cGgCGGCGCGGCGuCCCGcGGC-CGGc- -3'
miRNA:   3'- -CgGCCGCGCCGCcGGGU-CUGaGCUcu -5'
14272 3' -63.5 NC_003521.1 + 214823 0.66 0.710443
Target:  5'- gGCgCGGCGaCGGCGGuUCCAuGCUguuugcugcccggCGAGAg -3'
miRNA:   3'- -CG-GCCGC-GCCGCC-GGGUcUGA-------------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 17019 0.66 0.710443
Target:  5'- cGgCGGCGCaggcccgucgucuGGCGGCCCAcggcgguaacGGCgccgacagCGAGGa -3'
miRNA:   3'- -CgGCCGCG-------------CCGCCGGGU----------CUGa-------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 105599 0.66 0.702172
Target:  5'- cGCCGGCGCaGCcGCUCAGGCg----- -3'
miRNA:   3'- -CGGCCGCGcCGcCGGGUCUGagcucu -5'
14272 3' -63.5 NC_003521.1 + 145588 0.66 0.702172
Target:  5'- gGCaCGaCGCGGCGGCCguGGcCUCGc-- -3'
miRNA:   3'- -CG-GCcGCGCCGCCGGguCU-GAGCucu -5'
14272 3' -63.5 NC_003521.1 + 18703 0.66 0.702172
Target:  5'- gGCCGGCGCGaucCGGCUguGGCUg---- -3'
miRNA:   3'- -CGGCCGCGCc--GCCGGguCUGAgcucu -5'
14272 3' -63.5 NC_003521.1 + 76232 0.66 0.702172
Target:  5'- gGCCgguGGCGUGGCGGUuacugucucgCCAGcACcgguggCGAGAg -3'
miRNA:   3'- -CGG---CCGCGCCGCCG----------GGUC-UGa-----GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 223720 0.66 0.702172
Target:  5'- cGCCGGguaCGaCGGCgGGUCCGGuggCGGGAa -3'
miRNA:   3'- -CGGCC---GC-GCCG-CCGGGUCugaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 25692 0.66 0.702172
Target:  5'- cGCUGGCcuucGUGGCGGCCCuGAUcgUCa--- -3'
miRNA:   3'- -CGGCCG----CGCCGCCGGGuCUG--AGcucu -5'
14272 3' -63.5 NC_003521.1 + 111248 0.66 0.702172
Target:  5'- gGCgCGGCGCGGCGGagCAGcCaucgUCGGGc -3'
miRNA:   3'- -CG-GCCGCGCCGCCggGUCuG----AGCUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.