miRNA display CGI


Results 21 - 40 of 193 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 166323 0.66 0.729558
Target:  5'- aGCagGGCGUugaaguagaagGGCGGCaCCAG-CUCGAa- -3'
miRNA:   3'- -CGg-CCGCG-----------CCGCCG-GGUCuGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 111949 0.66 0.729558
Target:  5'- cCUGGCGCGGCGGCa-GGA--UGAGu -3'
miRNA:   3'- cGGCCGCGCCGCCGggUCUgaGCUCu -5'
14272 3' -63.5 NC_003521.1 + 6394 0.66 0.720491
Target:  5'- cGCCGcagcuacCGCGGCGGCgaCGGGucuugccgcCUCGGGAc -3'
miRNA:   3'- -CGGCc------GCGCCGCCGg-GUCU---------GAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 71394 0.66 0.728654
Target:  5'- cGCCGucguccgcgugaGCgagGCGGCGGCCCcgaaccugacagaGGACgaggCGGGGa -3'
miRNA:   3'- -CGGC------------CG---CGCCGCCGGG-------------UCUGa---GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 55767 0.66 0.720491
Target:  5'- gGCgCGGC-CGGCGGUaCAG-CUCGaAGAu -3'
miRNA:   3'- -CG-GCCGcGCCGCCGgGUCuGAGC-UCU- -5'
14272 3' -63.5 NC_003521.1 + 216206 0.66 0.726845
Target:  5'- aCCGGCGCGG-GGUCCuccuggcacacgcAGACgaggccuacgagCGGGAg -3'
miRNA:   3'- cGGCCGCGCCgCCGGG-------------UCUGa-----------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 74587 0.66 0.71136
Target:  5'- cGgCGGCGCGGCGuCCCGcGGC-CGGc- -3'
miRNA:   3'- -CgGCCGCGCCGCcGGGU-CUGaGCUcu -5'
14272 3' -63.5 NC_003521.1 + 118918 0.66 0.720491
Target:  5'- cGUCGGCGCcGCGGCgUGGGCggCGGc- -3'
miRNA:   3'- -CGGCCGCGcCGCCGgGUCUGa-GCUcu -5'
14272 3' -63.5 NC_003521.1 + 224737 0.66 0.71136
Target:  5'- cGCCGaCGCaGGCGGCCagcGCgUCGGGGc -3'
miRNA:   3'- -CGGCcGCG-CCGCCGGgucUG-AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 18703 0.66 0.702172
Target:  5'- gGCCGGCGCGaucCGGCUguGGCUg---- -3'
miRNA:   3'- -CGGCCGCGCc--GCCGGguCUGAgcucu -5'
14272 3' -63.5 NC_003521.1 + 64764 0.66 0.71136
Target:  5'- gGCCGGCGCGGCa--CCGGGCg----- -3'
miRNA:   3'- -CGGCCGCGCCGccgGGUCUGagcucu -5'
14272 3' -63.5 NC_003521.1 + 144176 0.66 0.720491
Target:  5'- cGCCGGCGCcGCcuGCCgCGcGCUgGAGAa -3'
miRNA:   3'- -CGGCCGCGcCGc-CGG-GUcUGAgCUCU- -5'
14272 3' -63.5 NC_003521.1 + 155613 0.66 0.729558
Target:  5'- uCCGGCGCGGCG-CCgggugacgCAGugUCGu-- -3'
miRNA:   3'- cGGCCGCGCCGCcGG--------GUCugAGCucu -5'
14272 3' -63.5 NC_003521.1 + 94481 0.66 0.729558
Target:  5'- -aCGGCGCGGUGauGCCUccGGA-UCGGGGa -3'
miRNA:   3'- cgGCCGCGCCGC--CGGG--UCUgAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 120932 0.66 0.720491
Target:  5'- uGCCcGCgGCGGCGGCuCCGG---CGAGGg -3'
miRNA:   3'- -CGGcCG-CGCCGCCG-GGUCugaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 214823 0.66 0.710443
Target:  5'- gGCgCGGCGaCGGCGGuUCCAuGCUguuugcugcccggCGAGAg -3'
miRNA:   3'- -CG-GCCGC-GCCGCC-GGGUcUGA-------------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 49580 0.66 0.71958
Target:  5'- cGUgGGcCGCGGCGccGCCUccucccaAGACUCGAu- -3'
miRNA:   3'- -CGgCC-GCGCCGC--CGGG-------UCUGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 153076 0.66 0.729558
Target:  5'- cGCC-GC-CGG-GGCCCGGGC-CGGGGc -3'
miRNA:   3'- -CGGcCGcGCCgCCGGGUCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 12137 0.66 0.720491
Target:  5'- uCgGGUGCGGCGGCCUuaauaaAGugUgGAu- -3'
miRNA:   3'- cGgCCGCGCCGCCGGG------UCugAgCUcu -5'
14272 3' -63.5 NC_003521.1 + 6169 0.66 0.729558
Target:  5'- cCUGGCGgGGCcaGGCgCAGAa-CGAGAc -3'
miRNA:   3'- cGGCCGCgCCG--CCGgGUCUgaGCUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.