miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 52192 0.72 0.383044
Target:  5'- cGCCGGgGCGGCGaGCUcauCAGACaguaCGGGGg -3'
miRNA:   3'- -CGGCCgCGCCGC-CGG---GUCUGa---GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 80143 0.72 0.368026
Target:  5'- gGCCGGUGCuGCGcGUCCAGccGCUgGAGGg -3'
miRNA:   3'- -CGGCCGCGcCGC-CGGGUC--UGAgCUCU- -5'
14272 3' -63.5 NC_003521.1 + 103228 0.72 0.353417
Target:  5'- cGCCGGCcagGCGGCGGCCCAaGAauaaCGGu- -3'
miRNA:   3'- -CGGCCG---CGCCGCCGGGU-CUga--GCUcu -5'
14272 3' -63.5 NC_003521.1 + 95546 0.72 0.374734
Target:  5'- cGCCGGCGCgcgagcuGGCcGCCgAGGC-CGAGGa -3'
miRNA:   3'- -CGGCCGCG-------CCGcCGGgUCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 224012 0.71 0.406322
Target:  5'- -gCGGCaGCGGCgGGCCCGGcGgUCGGGGc -3'
miRNA:   3'- cgGCCG-CGCCG-CCGGGUC-UgAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 160334 0.71 0.398464
Target:  5'- gGgCGGCGCGGUGGCCUccguCgUCGAGGg -3'
miRNA:   3'- -CgGCCGCGCCGCCGGGucu-G-AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 40719 0.71 0.45038
Target:  5'- uGCUGGCGC-GCGGCUguGACUgcagcugugugcuggCGAGGc -3'
miRNA:   3'- -CGGCCGCGcCGCCGGguCUGA---------------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 98475 0.71 0.447026
Target:  5'- cGgCGGcCGCGGCGGCCguGGCggCGGc- -3'
miRNA:   3'- -CgGCC-GCGCCGCCGGguCUGa-GCUcu -5'
14272 3' -63.5 NC_003521.1 + 223476 0.71 0.414276
Target:  5'- cGCCGGCGUcaCGGCCCGGGaggUGGGGc -3'
miRNA:   3'- -CGGCCGCGccGCCGGGUCUga-GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 152371 0.71 0.438703
Target:  5'- gGCCGGgGCGGCGcGCCCucuACUCuAGu -3'
miRNA:   3'- -CGGCCgCGCCGC-CGGGuc-UGAGcUCu -5'
14272 3' -63.5 NC_003521.1 + 56422 0.71 0.442021
Target:  5'- cGCCGGUacucGCGGUcgaaggccgccucguGGCCCAGGuC-CGAGAg -3'
miRNA:   3'- -CGGCCG----CGCCG---------------CCGGGUCU-GaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 221906 0.71 0.447026
Target:  5'- uGCCGGCGC-GCGGCgCCAcccUUCGGGGc -3'
miRNA:   3'- -CGGCCGCGcCGCCG-GGUcu-GAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 397 0.71 0.45038
Target:  5'- uGCUGGCGC-GCGGCUguGACUgcagcugugugcuggCGAGGc -3'
miRNA:   3'- -CGGCCGCGcCGCCGGguCUGA---------------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 52316 0.71 0.403954
Target:  5'- cGCCGGCcuccucguaucucgGCGGCGGaCCCAGGCccaCGGc- -3'
miRNA:   3'- -CGGCCG--------------CGCCGCC-GGGUCUGa--GCUcu -5'
14272 3' -63.5 NC_003521.1 + 102940 0.71 0.398464
Target:  5'- gGCCgaGGCGUcGCGGUCCAGgcGCUCGGGc -3'
miRNA:   3'- -CGG--CCGCGcCGCCGGGUC--UGAGCUCu -5'
14272 3' -63.5 NC_003521.1 + 109350 0.71 0.406322
Target:  5'- aGCCGGCGCaGGaGGCCgacgAGGC-CGAGAg -3'
miRNA:   3'- -CGGCCGCG-CCgCCGGg---UCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 122626 0.71 0.413477
Target:  5'- gGCCGcGCGCucGGCGGCCCcGACUuugccggCGGGc -3'
miRNA:   3'- -CGGC-CGCG--CCGCCGGGuCUGA-------GCUCu -5'
14272 3' -63.5 NC_003521.1 + 179049 0.71 0.414276
Target:  5'- cGCCGGagccgGCGGCGGuCCCGGugaCGGGGa -3'
miRNA:   3'- -CGGCCg----CGCCGCC-GGGUCugaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 162590 0.7 0.481165
Target:  5'- uGCCGGCuGCGGUGGCaCUc-GCUCGAc- -3'
miRNA:   3'- -CGGCCG-CGCCGCCG-GGucUGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 181470 0.7 0.481165
Target:  5'- aGUCGGCGCaGaCGGCCCAucccaGCUCGGuGAa -3'
miRNA:   3'- -CGGCCGCGcC-GCCGGGUc----UGAGCU-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.