miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 32920 0.68 0.616185
Target:  5'- cCCGGCGUaGGUGGCgCCGGAgagcccaagggCGAGAa -3'
miRNA:   3'- cGGCCGCG-CCGCCG-GGUCUga---------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 33448 0.67 0.627455
Target:  5'- cCCGGCagguagGCGaaggcGUGGCCCuGACUgGAGAc -3'
miRNA:   3'- cGGCCG------CGC-----CGCCGGGuCUGAgCUCU- -5'
14272 3' -63.5 NC_003521.1 + 36805 0.66 0.683655
Target:  5'- aGCCGcuCGCGGaCGGC--GGACUCGGGc -3'
miRNA:   3'- -CGGCc-GCGCC-GCCGggUCUGAGCUCu -5'
14272 3' -63.5 NC_003521.1 + 38218 0.7 0.489898
Target:  5'- gGCaggaGGCGCagGGCGGCCUcGGCgggCGGGGc -3'
miRNA:   3'- -CGg---CCGCG--CCGCCGGGuCUGa--GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 39540 0.67 0.627455
Target:  5'- aGCUGGCGCaggucGGUGGCCCcGACgcCGGc- -3'
miRNA:   3'- -CGGCCGCG-----CCGCCGGGuCUGa-GCUcu -5'
14272 3' -63.5 NC_003521.1 + 39586 0.7 0.472509
Target:  5'- uGCCGGCGuCGGCGGUCCuGcCcUGGGu -3'
miRNA:   3'- -CGGCCGC-GCCGCCGGGuCuGaGCUCu -5'
14272 3' -63.5 NC_003521.1 + 40179 0.67 0.655627
Target:  5'- cGuuGGCGUGcCGGUCCAGguuaaGCUUGAGc -3'
miRNA:   3'- -CggCCGCGCcGCCGGGUC-----UGAGCUCu -5'
14272 3' -63.5 NC_003521.1 + 40719 0.71 0.45038
Target:  5'- uGCUGGCGC-GCGGCUguGACUgcagcugugugcuggCGAGGc -3'
miRNA:   3'- -CGGCCGCGcCGCCGGguCUGA---------------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 43474 0.68 0.59931
Target:  5'- gGCCaGCGCGGCGGCCguG-CUgGc-- -3'
miRNA:   3'- -CGGcCGCGCCGCCGGguCuGAgCucu -5'
14272 3' -63.5 NC_003521.1 + 43554 0.67 0.646244
Target:  5'- cGCC-GCGacagaGGCGGCCgCuGACUgGGGGg -3'
miRNA:   3'- -CGGcCGCg----CCGCCGG-GuCUGAgCUCU- -5'
14272 3' -63.5 NC_003521.1 + 44363 0.73 0.339223
Target:  5'- cGCUGGgGCuGCGGCCCAcGCcCGAGGc -3'
miRNA:   3'- -CGGCCgCGcCGCCGGGUcUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 44909 0.75 0.235401
Target:  5'- -aCGGCGCGGCGGCgaGGACgaagaCGAGGa -3'
miRNA:   3'- cgGCCGCGCCGCCGggUCUGa----GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 49580 0.66 0.71958
Target:  5'- cGUgGGcCGCGGCGccGCCUccucccaAGACUCGAu- -3'
miRNA:   3'- -CGgCC-GCGCCGC--CGGG-------UCUGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 52192 0.72 0.383044
Target:  5'- cGCCGGgGCGGCGaGCUcauCAGACaguaCGGGGg -3'
miRNA:   3'- -CGGCCgCGCCGC-CGG---GUCUGa---GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 52316 0.71 0.403954
Target:  5'- cGCCGGCcuccucguaucucgGCGGCGGaCCCAGGCccaCGGc- -3'
miRNA:   3'- -CGGCCG--------------CGCCGCC-GGGUCUGa--GCUcu -5'
14272 3' -63.5 NC_003521.1 + 53200 0.7 0.489898
Target:  5'- -gCGGCGC-GCGGCCCGG-CUCGc-- -3'
miRNA:   3'- cgGCCGCGcCGCCGGGUCuGAGCucu -5'
14272 3' -63.5 NC_003521.1 + 53352 0.8 0.117277
Target:  5'- cGCCGGCGCGGCGGCggaggggccgaCAGAC-CGAGc -3'
miRNA:   3'- -CGGCCGCGCCGCCGg----------GUCUGaGCUCu -5'
14272 3' -63.5 NC_003521.1 + 55767 0.66 0.720491
Target:  5'- gGCgCGGC-CGGCGGUaCAG-CUCGaAGAu -3'
miRNA:   3'- -CG-GCCGcGCCGCCGgGUCuGAGC-UCU- -5'
14272 3' -63.5 NC_003521.1 + 56422 0.71 0.442021
Target:  5'- cGCCGGUacucGCGGUcgaaggccgccucguGGCCCAGGuC-CGAGAg -3'
miRNA:   3'- -CGGCCG----CGCCG---------------CCGGGUCU-GaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 58849 0.69 0.552878
Target:  5'- aCUGGCGCGGauGCCCAGcagguaaagGCccaCGAGAg -3'
miRNA:   3'- cGGCCGCGCCgcCGGGUC---------UGa--GCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.