miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 44363 0.73 0.339223
Target:  5'- cGCUGGgGCuGCGGCCCAcGCcCGAGGc -3'
miRNA:   3'- -CGGCCgCGcCGCCGGGUcUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 114428 0.74 0.292845
Target:  5'- gGCCGaGaccuGUGGCGGCaCCAGACccgCGAGAa -3'
miRNA:   3'- -CGGC-Cg---CGCCGCCG-GGUCUGa--GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 207357 0.75 0.26285
Target:  5'- gGUCGGCGCGGcCGGCCgAcAC-CGAGAa -3'
miRNA:   3'- -CGGCCGCGCC-GCCGGgUcUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 218476 0.75 0.240691
Target:  5'- cGUgGGCGCaGUGGcCCCGGACgUCGGGAa -3'
miRNA:   3'- -CGgCCGCGcCGCC-GGGUCUG-AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 44909 0.75 0.235401
Target:  5'- -aCGGCGCGGCGGCgaGGACgaagaCGAGGa -3'
miRNA:   3'- cgGCCGCGCCGCCGggUCUGa----GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 224012 0.71 0.406322
Target:  5'- -gCGGCaGCGGCgGGCCCGGcGgUCGGGGc -3'
miRNA:   3'- cgGCCG-CGCCG-CCGGGUC-UgAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 223476 0.71 0.414276
Target:  5'- cGCCGGCGUcaCGGCCCGGGaggUGGGGc -3'
miRNA:   3'- -CGGCCGCGccGCCGGGUCUga-GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 133379 0.7 0.481165
Target:  5'- cGCCGGCacagcGCGGCGGUCCGcgcuuucgcgucGGCUCucaGGAa -3'
miRNA:   3'- -CGGCCG-----CGCCGCCGGGU------------CUGAGc--UCU- -5'
14272 3' -63.5 NC_003521.1 + 17502 0.7 0.481165
Target:  5'- cGCCGGUcacgGCGGUucccGGCCCGGcgGCgCGGGAu -3'
miRNA:   3'- -CGGCCG----CGCCG----CCGGGUC--UGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 16797 0.7 0.480296
Target:  5'- uGCCGGCGCccauuauGG-GGCgCAGAUcCGAGAu -3'
miRNA:   3'- -CGGCCGCG-------CCgCCGgGUCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 39586 0.7 0.472509
Target:  5'- uGCCGGCGuCGGCGGUCCuGcCcUGGGu -3'
miRNA:   3'- -CGGCCGC-GCCGCCGGGuCuGaGCUCu -5'
14272 3' -63.5 NC_003521.1 + 133169 0.7 0.463932
Target:  5'- aGCCGGgacaccagcaGUGGCGGCCUcGGCgaUCGGGAc -3'
miRNA:   3'- -CGGCCg---------CGCCGCCGGGuCUG--AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 168541 0.7 0.463932
Target:  5'- gGCCaGCGCGGCGGCggcgcuggCGGGCUgCGGGu -3'
miRNA:   3'- -CGGcCGCGCCGCCGg-------GUCUGA-GCUCu -5'
14272 3' -63.5 NC_003521.1 + 212888 0.7 0.463932
Target:  5'- cGCgGGCGaCGGgGGUgUcgguGGACUCGAGGa -3'
miRNA:   3'- -CGgCCGC-GCCgCCGgG----UCUGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 145384 0.7 0.463078
Target:  5'- aGCCGGUGCGcGaCGGCCUGGGCcugcucaUCGAc- -3'
miRNA:   3'- -CGGCCGCGC-C-GCCGGGUCUG-------AGCUcu -5'
14272 3' -63.5 NC_003521.1 + 96785 0.7 0.455436
Target:  5'- cGCCGGCagcaGCGGCGGCgCuCGGGCaCGAu- -3'
miRNA:   3'- -CGGCCG----CGCCGCCG-G-GUCUGaGCUcu -5'
14272 3' -63.5 NC_003521.1 + 397 0.71 0.45038
Target:  5'- uGCUGGCGC-GCGGCUguGACUgcagcugugugcuggCGAGGc -3'
miRNA:   3'- -CGGCCGCGcCGCCGGguCUGA---------------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 221906 0.71 0.447026
Target:  5'- uGCCGGCGC-GCGGCgCCAcccUUCGGGGc -3'
miRNA:   3'- -CGGCCGCGcCGCCG-GGUcu-GAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 56422 0.71 0.442021
Target:  5'- cGCCGGUacucGCGGUcgaaggccgccucguGGCCCAGGuC-CGAGAg -3'
miRNA:   3'- -CGGCCG----CGCCG---------------CCGGGUCU-GaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 152371 0.71 0.438703
Target:  5'- gGCCGGgGCGGCGcGCCCucuACUCuAGu -3'
miRNA:   3'- -CGGCCgCGCCGC-CGGGuc-UGAGcUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.