miRNA display CGI


Results 61 - 80 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 397 0.71 0.45038
Target:  5'- uGCUGGCGC-GCGGCUguGACUgcagcugugugcuggCGAGGc -3'
miRNA:   3'- -CGGCCGCGcCGCCGGguCUGA---------------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 96785 0.7 0.455436
Target:  5'- cGCCGGCagcaGCGGCGGCgCuCGGGCaCGAu- -3'
miRNA:   3'- -CGGCCG----CGCCGCCG-G-GUCUGaGCUcu -5'
14272 3' -63.5 NC_003521.1 + 53200 0.7 0.489898
Target:  5'- -gCGGCGC-GCGGCCCGG-CUCGc-- -3'
miRNA:   3'- cgGCCGCGcCGCCGGGUCuGAGCucu -5'
14272 3' -63.5 NC_003521.1 + 238446 0.7 0.489898
Target:  5'- gGCaggaGGCGCagGGCGGCCUcGGCgggCGGGGc -3'
miRNA:   3'- -CGg---CCGCG--CCGCCGGGuCUGa--GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 131107 0.7 0.498704
Target:  5'- -aCGGCGgGGCGGCgCGGcuGC-CGGGAa -3'
miRNA:   3'- cgGCCGCgCCGCCGgGUC--UGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 6085 0.69 0.50758
Target:  5'- gGCCGGUGCGGCGGCguuccgCCAcGGCUa---- -3'
miRNA:   3'- -CGGCCGCGCCGCCG------GGU-CUGAgcucu -5'
14272 3' -63.5 NC_003521.1 + 105943 0.69 0.50758
Target:  5'- gGCCGGCGCGGauGaugaCCGuGugUCGGGu -3'
miRNA:   3'- -CGGCCGCGCCgcCg---GGU-CugAGCUCu -5'
14272 3' -63.5 NC_003521.1 + 197542 0.69 0.516523
Target:  5'- aGUCGGCggacgagaGCGGCGGCgagcuCCuGAgCUCGGGAg -3'
miRNA:   3'- -CGGCCG--------CGCCGCCG-----GGuCU-GAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 209205 0.69 0.525527
Target:  5'- cGUCGGcCGCGGUGGCCCugccagcuGACccugcCGAGu -3'
miRNA:   3'- -CGGCC-GCGCCGCCGGGu-------CUGa----GCUCu -5'
14272 3' -63.5 NC_003521.1 + 145897 0.69 0.534591
Target:  5'- cGCCGGCggcgggagcaGCGGCGGUUCGcaaacGGCcuUCGAGGa -3'
miRNA:   3'- -CGGCCG----------CGCCGCCGGGU-----CUG--AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 181470 0.7 0.481165
Target:  5'- aGUCGGCGCaGaCGGCCCAucccaGCUCGGuGAa -3'
miRNA:   3'- -CGGCCGCGcC-GCCGGGUc----UGAGCU-CU- -5'
14272 3' -63.5 NC_003521.1 + 162590 0.7 0.481165
Target:  5'- uGCCGGCuGCGGUGGCaCUc-GCUCGAc- -3'
miRNA:   3'- -CGGCCG-CGCCGCCG-GGucUGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 145384 0.7 0.463078
Target:  5'- aGCCGGUGCGcGaCGGCCUGGGCcugcucaUCGAc- -3'
miRNA:   3'- -CGGCCGCGC-C-GCCGGGUCUG-------AGCUcu -5'
14272 3' -63.5 NC_003521.1 + 212888 0.7 0.463932
Target:  5'- cGCgGGCGaCGGgGGUgUcgguGGACUCGAGGa -3'
miRNA:   3'- -CGgCCGC-GCCgCCGgG----UCUGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 168541 0.7 0.463932
Target:  5'- gGCCaGCGCGGCGGCggcgcuggCGGGCUgCGGGu -3'
miRNA:   3'- -CGGcCGCGCCGCCGg-------GUCUGA-GCUCu -5'
14272 3' -63.5 NC_003521.1 + 133169 0.7 0.463932
Target:  5'- aGCCGGgacaccagcaGUGGCGGCCUcGGCgaUCGGGAc -3'
miRNA:   3'- -CGGCCg---------CGCCGCCGGGuCUG--AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 39586 0.7 0.472509
Target:  5'- uGCCGGCGuCGGCGGUCCuGcCcUGGGu -3'
miRNA:   3'- -CGGCCGC-GCCGCCGGGuCuGaGCUCu -5'
14272 3' -63.5 NC_003521.1 + 16797 0.7 0.480296
Target:  5'- uGCCGGCGCccauuauGG-GGCgCAGAUcCGAGAu -3'
miRNA:   3'- -CGGCCGCG-------CCgCCGgGUCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 17502 0.7 0.481165
Target:  5'- cGCCGGUcacgGCGGUucccGGCCCGGcgGCgCGGGAu -3'
miRNA:   3'- -CGGCCG----CGCCG----CCGGGUC--UGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 133379 0.7 0.481165
Target:  5'- cGCCGGCacagcGCGGCGGUCCGcgcuuucgcgucGGCUCucaGGAa -3'
miRNA:   3'- -CGGCCG-----CGCCGCCGGGU------------CUGAGc--UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.