miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 197335 0.68 0.99731
Target:  5'- gAUGUUGgccgccgcggccAGCacgGcCGCCGCGCUGGc -3'
miRNA:   3'- aUAUAAU------------UCGaaaCuGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 61693 0.68 0.99731
Target:  5'- -----gGAGCgucaggggUUGACGCUGUGCCu- -3'
miRNA:   3'- auauaaUUCGa-------AACUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 32866 0.68 0.997692
Target:  5'- -----gAGGCcgaucggUUUGGCGcCCGCGCCGc -3'
miRNA:   3'- auauaaUUCG-------AAACUGC-GGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 12672 0.68 0.997731
Target:  5'- -----cAAGUggUUGguGCGCCGCGaCCGGu -3'
miRNA:   3'- auauaaUUCGa-AAC--UGCGGCGC-GGCC- -5'
14272 5' -49.6 NC_003521.1 + 214269 0.68 0.997731
Target:  5'- -------cGCccUGACGCCGuCGCUGGc -3'
miRNA:   3'- auauaauuCGaaACUGCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 14136 0.68 0.997731
Target:  5'- -----aGGGCUggcacgUGACGuuGCGCCu- -3'
miRNA:   3'- auauaaUUCGAa-----ACUGCggCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 169769 0.68 0.997731
Target:  5'- ------cGGCccaUGGCGCCGCGCUuuGGg -3'
miRNA:   3'- auauaauUCGaa-ACUGCGGCGCGG--CC- -5'
14272 5' -49.6 NC_003521.1 + 226841 0.68 0.997731
Target:  5'- -------cGCcc-GcCGCCGCGCCGGg -3'
miRNA:   3'- auauaauuCGaaaCuGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 34702 0.67 0.998096
Target:  5'- cGUcgUAGGCgaagacGGCGCCGUGCgCGu -3'
miRNA:   3'- aUAuaAUUCGaaa---CUGCGGCGCG-GCc -5'
14272 5' -49.6 NC_003521.1 + 30226 0.67 0.998096
Target:  5'- ------cGGCcgUUGGCGUCGCGCUGc -3'
miRNA:   3'- auauaauUCGa-AACUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 113384 0.67 0.998096
Target:  5'- --gGUUAcGGCg--GACGCCGCgGgCGGg -3'
miRNA:   3'- auaUAAU-UCGaaaCUGCGGCG-CgGCC- -5'
14272 5' -49.6 NC_003521.1 + 155641 0.67 0.998096
Target:  5'- gGUGgu-AGCagaaGCGCCGUGCUGGg -3'
miRNA:   3'- aUAUaauUCGaaacUGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 64527 0.67 0.998096
Target:  5'- cAUGUUGcGCgacGACGCCGaCGCCc- -3'
miRNA:   3'- aUAUAAUuCGaaaCUGCGGC-GCGGcc -5'
14272 5' -49.6 NC_003521.1 + 184362 0.67 0.998096
Target:  5'- -----cGGGCcgUGGCGCgGCGCCu- -3'
miRNA:   3'- auauaaUUCGaaACUGCGgCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 38469 0.67 0.99841
Target:  5'- ----cUGGGCUcUGGCGgUggGCGCCGGc -3'
miRNA:   3'- auauaAUUCGAaACUGCgG--CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 119199 0.67 0.99841
Target:  5'- -----aAGGacgUGGCGCUGCGCCaGGu -3'
miRNA:   3'- auauaaUUCgaaACUGCGGCGCGG-CC- -5'
14272 5' -49.6 NC_003521.1 + 139188 0.67 0.99841
Target:  5'- -------cGCUgaacgUGACGCgcuaccaGCGCCGGg -3'
miRNA:   3'- auauaauuCGAa----ACUGCGg------CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 221764 0.67 0.99841
Target:  5'- ------cAGCgucuGCGCCGCGCCGc -3'
miRNA:   3'- auauaauUCGaaacUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 65971 0.67 0.998679
Target:  5'- aAUGgaauGGCUggacGugGCCaCGCCGGa -3'
miRNA:   3'- aUAUaau-UCGAaa--CugCGGcGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 107441 0.67 0.998679
Target:  5'- -----aAAGCgcgGAcCGCCGCGCUGu -3'
miRNA:   3'- auauaaUUCGaaaCU-GCGGCGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.