miRNA display CGI


Results 41 - 60 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 211954 0.69 0.994115
Target:  5'- ----gUGAGCUUgGGCgacucgaccguGCCGCGCCGc -3'
miRNA:   3'- auauaAUUCGAAaCUG-----------CGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 167060 0.69 0.994115
Target:  5'- -------cGCUcaUGACGCCGgUGCCGGc -3'
miRNA:   3'- auauaauuCGAa-ACUGCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 166231 0.69 0.994115
Target:  5'- gGUAgaaGAGCg-UGAUGCCGC-CCGGc -3'
miRNA:   3'- aUAUaa-UUCGaaACUGCGGCGcGGCC- -5'
14272 5' -49.6 NC_003521.1 + 86580 0.69 0.994924
Target:  5'- -----gAGGCaggGcACGCCGCaGCCGGg -3'
miRNA:   3'- auauaaUUCGaaaC-UGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 86529 0.69 0.994924
Target:  5'- ------cGGCcccgGACGCCGUGCCGc -3'
miRNA:   3'- auauaauUCGaaa-CUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 169297 0.69 0.994924
Target:  5'- -----cGGGCUcggUGACGUCG-GCCGGc -3'
miRNA:   3'- auauaaUUCGAa--ACUGCGGCgCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 98967 0.68 0.99564
Target:  5'- ------uGGCUggUGAgGCgGUGCCGGg -3'
miRNA:   3'- auauaauUCGAa-ACUgCGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 225736 0.68 0.99564
Target:  5'- ----gUAGGCUguUUGAUG-CGCGCCGa -3'
miRNA:   3'- auauaAUUCGA--AACUGCgGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 68384 0.68 0.996271
Target:  5'- -----aGAGCgaggugGACGCCGUgagauGCCGGc -3'
miRNA:   3'- auauaaUUCGaaa---CUGCGGCG-----CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 232820 0.68 0.996271
Target:  5'- -----gGAGCUacGGCGCUGCcCCGGu -3'
miRNA:   3'- auauaaUUCGAaaCUGCGGCGcGGCC- -5'
14272 5' -49.6 NC_003521.1 + 19860 0.68 0.996502
Target:  5'- -----gGAGCUgcagcgcucccugcUGACgGCCGCGUCGGc -3'
miRNA:   3'- auauaaUUCGAa-------------ACUG-CGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 105302 0.68 0.996826
Target:  5'- cAUGgcGGGCgugggGACGCCGCGCg-- -3'
miRNA:   3'- aUAUaaUUCGaaa--CUGCGGCGCGgcc -5'
14272 5' -49.6 NC_003521.1 + 110822 0.68 0.996826
Target:  5'- ------cGGCcgUUGcGCGCCGCcGCCGGc -3'
miRNA:   3'- auauaauUCGa-AAC-UGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 149396 0.68 0.996826
Target:  5'- ----gUGGGCUUcGugGCCGUgGCCGu -3'
miRNA:   3'- auauaAUUCGAAaCugCGGCG-CGGCc -5'
14272 5' -49.6 NC_003521.1 + 55537 0.68 0.996826
Target:  5'- ------cAGCga--GCGCCGCGCCGa -3'
miRNA:   3'- auauaauUCGaaacUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 166500 0.68 0.996826
Target:  5'- ------cAGCgg-GGCGCCGCGuCCGa -3'
miRNA:   3'- auauaauUCGaaaCUGCGGCGC-GGCc -5'
14272 5' -49.6 NC_003521.1 + 62109 0.68 0.996826
Target:  5'- -------cGCUUcGGCGcCCGCGCgGGg -3'
miRNA:   3'- auauaauuCGAAaCUGC-GGCGCGgCC- -5'
14272 5' -49.6 NC_003521.1 + 61693 0.68 0.99731
Target:  5'- -----gGAGCgucaggggUUGACGCUGUGCCu- -3'
miRNA:   3'- auauaaUUCGa-------AACUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 190346 0.68 0.99731
Target:  5'- -------cGC--UGugGCaCGCGCCGGg -3'
miRNA:   3'- auauaauuCGaaACugCG-GCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 135604 0.68 0.99731
Target:  5'- -------cGCUuuuucUUGACGCCGCGCagcucgCGGg -3'
miRNA:   3'- auauaauuCGA-----AACUGCGGCGCG------GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.