miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 86529 0.69 0.994924
Target:  5'- ------cGGCcccgGACGCCGUGCCGc -3'
miRNA:   3'- auauaauUCGaaa-CUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 86580 0.69 0.994924
Target:  5'- -----gAGGCaggGcACGCCGCaGCCGGg -3'
miRNA:   3'- auauaaUUCGaaaC-UGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 87923 0.74 0.92565
Target:  5'- ------uGGCUggc-CGCCGCGCCGGg -3'
miRNA:   3'- auauaauUCGAaacuGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 89823 0.66 0.999614
Target:  5'- -----aAGGCUUUcuccacguaGACGCCGUaGCCGa -3'
miRNA:   3'- auauaaUUCGAAA---------CUGCGGCG-CGGCc -5'
14272 5' -49.6 NC_003521.1 + 90155 0.7 0.988392
Target:  5'- ------cAGCagcGGCGCCGCcGCCGGa -3'
miRNA:   3'- auauaauUCGaaaCUGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 91584 0.69 0.993206
Target:  5'- cGUcgUAGGCguaguaGCCGCGCCGc -3'
miRNA:   3'- aUAuaAUUCGaaacugCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 98166 0.69 0.992188
Target:  5'- -------uGCUgacGGCGCUGCGCCGa -3'
miRNA:   3'- auauaauuCGAaa-CUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 98967 0.68 0.99564
Target:  5'- ------uGGCUggUGAgGCgGUGCCGGg -3'
miRNA:   3'- auauaauUCGAa-ACUgCGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 99448 0.66 0.999519
Target:  5'- -----gAAGCgguagGGCGCCagacaGCGCUGGa -3'
miRNA:   3'- auauaaUUCGaaa--CUGCGG-----CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 102329 0.75 0.873959
Target:  5'- cGUcgUGcGCgugGGCGCCGaCGCCGGg -3'
miRNA:   3'- aUAuaAUuCGaaaCUGCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 103309 0.66 0.999614
Target:  5'- -----gAAGCg--GACGCgGCGCUGc -3'
miRNA:   3'- auauaaUUCGaaaCUGCGgCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 103325 0.66 0.999692
Target:  5'- -----cAGGCgcUGACGCgccaGCGCCGu -3'
miRNA:   3'- auauaaUUCGaaACUGCGg---CGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 105302 0.68 0.996826
Target:  5'- cAUGgcGGGCgugggGACGCCGCGCg-- -3'
miRNA:   3'- aUAUaaUUCGaaa--CUGCGGCGCGgcc -5'
14272 5' -49.6 NC_003521.1 + 105397 0.67 0.998909
Target:  5'- -------cGCg--GGCGCCaaaucGCGCCGGg -3'
miRNA:   3'- auauaauuCGaaaCUGCGG-----CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 107441 0.67 0.998679
Target:  5'- -----aAAGCgcgGAcCGCCGCGCUGu -3'
miRNA:   3'- auauaaUUCGaaaCU-GCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 108194 0.67 0.999103
Target:  5'- -------cGCcggUGGCGCCGCcGCCGa -3'
miRNA:   3'- auauaauuCGaa-ACUGCGGCG-CGGCc -5'
14272 5' -49.6 NC_003521.1 + 108220 0.66 0.999692
Target:  5'- -----gAAGCcguugcgGACGCCGaCGCCGc -3'
miRNA:   3'- auauaaUUCGaaa----CUGCGGC-GCGGCc -5'
14272 5' -49.6 NC_003521.1 + 109502 0.7 0.98979
Target:  5'- ------cAGCga-GugGUCGCGCCGGc -3'
miRNA:   3'- auauaauUCGaaaCugCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 110822 0.68 0.996826
Target:  5'- ------cGGCcgUUGcGCGCCGCcGCCGGc -3'
miRNA:   3'- auauaauUCGa-AAC-UGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 111204 0.66 0.999519
Target:  5'- ----gUGGGCUg-GGCGaUgGCGCCGGa -3'
miRNA:   3'- auauaAUUCGAaaCUGC-GgCGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.